Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3290 ATGCCGTCGTCAGACTCCGGCGAGACTCGCCGCTCAACCAAGCCCCAAGTCCGCGCGGCCGCACTCCCCCCGCCGGAGCAGGAGAATCTCCCCTGCCCACGCTGCGACTCCACAAACACCAAGTTCTGCTACTACAACAACTACAACTACTCTCAGCCTCGCCACTTCTGCAAGTCCTGCCGCCGCTACTGGACCCACGGCGGCACCCTCCGCGACATCCCCGTTGGCGGCGGAAGCCGCAAGAACGCCAAGCGCACCCGCACCCACCACTCCACCTCCACCGCCACTTCCGCAGTCACCTCACCCTCCGACAACCCCTTCCCGGCGATGGTCCCTGTCACCGGATGCCCCGTCGCGTTCAGCGGCGGCGTCGACGGCGAAATCAAACAAACCGTCAACGTTTGCGGCGGCAGCTTCACCTCGTTGCTGAGCAACACTCAAGCCCCGGGGTTTCTGGCTCTGGGTGGGTTCGGGCTTGGGCTTGGACATGGGTTTGAAGACATGGGCTTCGGGATCGGGCGAGCGGGTTGGGCTTATCCCGGAATGGTGGACGGAGCACACATCGGCGGCGGCGGTGTTGTTTCGGCACCCGGCATCGGGAACTCGTGGCAGTTGGAAGGTGGCGGCGATGGTGGGTTTGTCGGTGGAGACTGCTTCTCTTGGCCGGGACTTGCTATTTCAACACCGGGAAATGGTCTCAAATGA 705 0.6355 MPSSDSGETRRSTKPQVRAAALPPPEQENLPCPRCDSTNTKFCYYNNYNYSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRTRTHHSTSTATSAVTSPSDNPFPAMVPVTGCPVAFSGGVDGEIKQTVNVCGGSFTSLLSNTQAPGFLALGGFGLGLGHGFEDMGFGIGRAGWAYPGMVDGAHIGGGGVVSAPGIGNSWQLEGGGDGGFVGGDCFSWPGLAISTPGNGLK* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3290 234 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Lja4g3290 234 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Lja4g3290 234 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 231 IPR045174 GO:0003700|GO:0006355
Lja4g3290 234 MobiDBLite consensus disorder prediction 75 106 - -
Lja4g3290 234 MobiDBLite consensus disorder prediction 1 28 - -
Lja4g3290 234 MobiDBLite consensus disorder prediction 89 104 - -
Lja4g3290 234 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
Lja4g3290 234 PANTHER DOF ZINC FINGER PROTEIN DOF3.4 1 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3290 Lja-Chr4 62024109 62024813 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3290 1 234 C2C2-Dof Transcription Factor Family AT3G50410 47.843 1.01e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja4g3290 zf-Dof 7.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3290 - - gmx:778099 306.219