Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3179 ATGGAAACCACCTCGTTTTCCAAATTGGTGGTTGCATTTTGCTTGGCCTTGTGTTTTGGCTCTCAGTTGATTCACTCCACTGTCACCTATGACAGAAAAGCCATTCTCATCAATGGCCAAAGGAGAATCCTTCTCTCTGGTTCCATACATTATCCCAGAAGTACCCCTGATATGTGGGAAGATCTGATTCAGAAAGCCAAAGAAGGGGGTCTTGATGTAATTGAGACCTATGTCTTCTGGAATGTTCACGAGCCTTCTCCTGGCAATTACAATTTTGAAGGAAAGTATGATCTGGTGAAATTCATAAAGACAGTTCAAAAAGCAGGGCTTTATGCTCATCTCCGCATTGGACCTTATGTCTGTGCAGAATGGAATTTTGGAGGATTTCCTGTTTGGCTGAAGTATGTTCCTGGCATAAACTTCAGAACTGACAATGAACCTTTCAAGAGGGCGATGCAAGGGTTCACTGAGAAGATTGTTGGAATGATGAAGAGTGAGCAACTCTTTCAATCCCAGGGTGGACCTATCATACTCTCTCAGATTGAGAATGAGTATGGGGCACAGAGTAAGTTATTTGGAGCTGCAGGCCAAAACTATGTTAATTGGGCAGCAAAAATGGCTGTAGAAATGGGAACTGGTGTCCCTTGGGTGATGTGTAAGGAAGATGATGCACCAGATCCAGTGATAAACACGTGTAATGGCTTCTACTGTGACAAGTTTACTCCAAATAGAGCCTATAAGCCTACAATTTGGACTGAAGCTTGGAGTGGCTGGTTTACAGAATTTGGAGGTCCAATTCACAAAAGACCTGTTCAGGATTTGGCCTTTGGAGTTGCTAGATTTGTAGCAAGAGGAGGGTCTTTTGTAAATTACTACATGTATCATGGAGGAACCAATTTTGGACGAACCGCTGGAGGACCTTTCGTCGCCACGAGTTATGACTATGATGCTCCATTAGATGAATATGGTTTGATTAGGCAACCAAAATATGGTCATCTAAAGGAGCTTCATAGAGCTATCAAGATGTGTGAGCGAGCTTTGGTTTCAACTGATCCAATTATTACTTCATTAGGGGACTTCCAACAGGCTCATGTGTACTCTACAGAATCTGGAGATTGTGCTGCTTTTCTCTCAAACTCTGATGCAAAATCCTCTGCTAGAGTGATGTTCAACAACATGCATTATAGCTTACCTCCTTGGTCTGTCAGCATCCTCCCTGATTGTAGAAATGTTGTCTTCAACACAGCAAAAGTTGGAGTGCAAACGTCTCAGATGCAAATGTTGCCAACGAATAATCAAATGTTCCCATGGGAGAGTTTTGATGAAGAAATTTCTTCTCTGGAGGATGACAGCGCCACAATCACTGCCTCTGGTCTCTTAGAACAGATAAATGTAACACGGGATACGAGCGATTATCTTTGGTATATAACTAGTGTTGATGTAGGTTCATCTGAATCCTTTCTACATAAAGGTGAACTCCCAACTCTCATGGTTCAGTCTACAGGCCATGCTGTGCATGTTTTCATCAATGGTCAACTTTCTGGTTCTGGTTATGGAACGAGGGAGAGTAGGAGGTTCTTATATACTGGCAAGGTCAACCTTCATGCTGGAAAAAACAGAATAGCTCTGCTCAGTGTTGCCATTGGACTTCCTAATGTGGGAAGTCATTTTGAGACATGGAACACAGGAATCCTAGGCCCAGTTGCACTCCATGGACTTGACCAGGGAAAATGGGACTTGTCCGGGCAGAAATGGACATATCAGGTTGGGCTGAAAGGAGAGGCCATGAATCTTGCTTCTCCAAACAGTATCTCTTCTGTTGACTGGATGCAGTCCGCAATAGTTGTACAAAGAAACCAACCATTAACATGGCATAAGGCCTATTTCGATGCTCCGGAAGGAGATGAACCATTGGCATTGGACATGGAGGGTATGGGTAAAGGTCAAATATGGATTAATGGACAGAGTATTGGAAGATATTGGCTTGCATTTGCTTCTGGTGATTGCAATGGTTGTAACTATGCTGGGTCATTTAGACCAACAAAGTGCCAACTTGGTTGTGGCCAACCAACCCAACGATGGTACCATGTCCCCAGATCTTGGTTAAAGCCAACTCAAAATCTATTGGTTATCTTTGAGGAACTTGGGGGAGACCCTTCAAAAATCTCACTTGTGAAGAGATCAGTGAGCAGTGTATGTGCTGATGTATCAGAGTTCCACCCAAATATTAAGAATTGGCACATTGAGAGCTATGGGAAGTCACAAGAGTTCCGTGCACCAAAGGTTCACTTGCACTGCAGTCCTGGCCAGACTATCTCTTCCATTAAATTTGCAAGCTTTGGAACTCCTTTGGGGACTTGTGGGAACTATGAGCAAGGAGCTTGCCATTCACCCGCATCCTATGCCATTTTAGAGAAGAAATGTATAGGAAAGCCAAAATGCATAGTCACTGTAACAAACAGCAACTTTGGGCAAGACCCTTGTCCCAATGTAATGAAGAGGTTATCTGTTGAAGCTGTTTGCACTCCAACAAATTGGAGGGGTTGA 2547 0.4335 METTSFSKLVVAFCLALCFGSQLIHSTVTYDRKAILINGQRRILLSGSIHYPRSTPDMWEDLIQKAKEGGLDVIETYVFWNVHEPSPGNYNFEGKYDLVKFIKTVQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGINFRTDNEPFKRAMQGFTEKIVGMMKSEQLFQSQGGPIILSQIENEYGAQSKLFGAAGQNYVNWAAKMAVEMGTGVPWVMCKEDDAPDPVINTCNGFYCDKFTPNRAYKPTIWTEAWSGWFTEFGGPIHKRPVQDLAFGVARFVARGGSFVNYYMYHGGTNFGRTAGGPFVATSYDYDAPLDEYGLIRQPKYGHLKELHRAIKMCERALVSTDPIITSLGDFQQAHVYSTESGDCAAFLSNSDAKSSARVMFNNMHYSLPPWSVSILPDCRNVVFNTAKVGVQTSQMQMLPTNNQMFPWESFDEEISSLEDDSATITASGLLEQINVTRDTSDYLWYITSVDVGSSESFLHKGELPTLMVQSTGHAVHVFINGQLSGSGYGTRESRRFLYTGKVNLHAGKNRIALLSVAIGLPNVGSHFETWNTGILGPVALHGLDQGKWDLSGQKWTYQVGLKGEAMNLASPNSISSVDWMQSAIVVQRNQPLTWHKAYFDAPEGDEPLALDMEGMGKGQIWINGQSIGRYWLAFASGDCNGCNYAGSFRPTKCQLGCGQPTQRWYHVPRSWLKPTQNLLVIFEELGGDPSKISLVKRSVSSVCADVSEFHPNIKNWHIESYGKSQEFRAPKVHLHCSPGQTISSIKFASFGTPLGTCGNYEQGACHSPASYAILEKKCIGKPKCIVTVTNSNFGQDPCPNVMKRLSVEAVCTPTNWRG* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3179 848 PRINTS Glycosyl hydrolase family 35 signature 171 186 IPR001944 GO:0004553|GO:0005975
Lja4g3179 848 PRINTS Glycosyl hydrolase family 35 signature 114 133 IPR001944 GO:0004553|GO:0005975
Lja4g3179 848 PRINTS Glycosyl hydrolase family 35 signature 59 77 IPR001944 GO:0004553|GO:0005975
Lja4g3179 848 PRINTS Glycosyl hydrolase family 35 signature 287 302 IPR001944 GO:0004553|GO:0005975
Lja4g3179 848 PRINTS Glycosyl hydrolase family 35 signature 647 663 IPR001944 GO:0004553|GO:0005975
Lja4g3179 848 PRINTS Glycosyl hydrolase family 35 signature 250 265 IPR001944 GO:0004553|GO:0005975
Lja4g3179 848 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Lja4g3179 848 PRINTS Glycosyl hydrolase family 35 signature 38 55 IPR001944 GO:0004553|GO:0005975
Lja4g3179 848 PRINTS Glycosyl hydrolase family 35 signature 620 634 IPR001944 GO:0004553|GO:0005975
Lja4g3179 848 Gene3D Glycosidases 23 344 - -
Lja4g3179 848 Pfam Glycosyl hydrolases family 35 35 339 IPR031330 -
Lja4g3179 848 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 173 185 IPR019801 GO:0004553|GO:0005975
Lja4g3179 848 Pfam Beta-sandwich domain in beta galactosidase 347 418 IPR041392 -
Lja4g3179 848 Gene3D - 601 734 - -
Lja4g3179 848 PANTHER BETA-GALACTOSIDASE 3 4 837 - -
Lja4g3179 848 Pfam Galactose binding lectin domain 764 841 IPR000922 GO:0030246
Lja4g3179 848 Gene3D - 442 581 - -
Lja4g3179 848 SUPERFAMILY Galactose-binding domain-like 402 574 IPR008979 -
Lja4g3179 848 PANTHER BETA-GALACTOSIDASE RELATED 4 837 IPR001944 GO:0004553|GO:0005975
Lja4g3179 848 SUPERFAMILY Galactose-binding domain-like 584 748 IPR008979 -
Lja4g3179 848 Gene3D - 752 847 IPR043159 -
Lja4g3179 848 SUPERFAMILY (Trans)glycosidases 25 344 IPR017853 -
Lja4g3179 848 ProSiteProfiles SUEL-type lectin domain profile. 760 842 IPR000922 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3179 Lja-Chr4 60124214 60130088 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3554 1 44246291 44251480 Lja4g3179 4 60124214 60130088 ECH
Lja5g3280 5 63261563 63268310 Lja4g3179 4 60124214 60130088 ECH
Lja4g3179 4 60124214 60130088 Lja4g3179 4 60124214 60130088 ECH