Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2141 ATGCAGCAAGTAAGAGACCCTGCTATTAGGCTCTTCGGCCAGAAGATTTCCCGGACCGAAGATGCCGACGACACTGGTTTTTCCGGCGCCGGTTGCATCAATATTGACAAAGAAGAAGAACAACAACAATACAGAGACGGTGGTGGTGGAATTGGACAAAACCCAGAAGAGGAGAAAGACCCAATTGATAATGAGGATTCAGGATCTGAAAATGGTAATGAGAAAGAGCAAGAAGCTGATCTTCCTCCTGCAAATGAAGAAGAGACCAAGAACTCGAGCACCTCACCAGGGGCGGTTGTGAACCCAGAAACACCTTCCATAGAAGAAGAAACTGCAAAATCAAAAAGTGAACAAAGCGATCCAGCCCAGTCACAAGAGAAAACAACACTGAAGAAGCCAGATAAAGTGATACCATGTCCCCGTTGCAACAGCATGGATACAAAATTCTGCTACTACAATAACTACAACGTCAACCAGCCACGTTATTTCTGCAAGGCCTGCCAGAGATACTGGACTTCAGGCGGCACCATGAGGAACGTTCCAGTGGGAGCAGGGCGAAGAAAGAACAAGAACTCTTCCTCACATTTTGGCCACATCAGTATCTCTGAGGCTCTTCAAGCAGCTAGAATTGATGCCCATGATGGAACAACTCACCTCCCTGCTTTGAAAACCAATGGTAGAGTCCTCAGTTTTGGATTAGATGGACCTATTTGTGACTCCATGACATCTGTCCTAAATCTTGGAGAGAACAAGGTCCTGAATCAAACCCTTCCCGTTCCTTGCAAAAGTGGGGAAAATGGTGATGACTGCTCAAGTGCAACATCTTCCATTACTGTTTCAAGTTCCGTGGGAGAAAGTAACAAAAGTTCCATCCAAAACAATGGTTTCATTCCTCAACTTCCATGCATTCCTAGTGTTCCTTGGCCTTATTATACCTGGAACACTACTTCAGTTCCCTCACCTGCTATGTGTCCTTCAGGATTTCTCTATCCTGCTGCATTTTGGAACTGCAGCATGCCAGGGAATTGGAATGTTCCATGGTTTCCATCAAATCCATCTACTTCAAACCCAAACTCTCCAAGCTCAGGTCCAAATTCTCCAACTCTGGGGAAGCACTCTAGGGATGTTGATGATGTGAGTGAAAAGGACTCTTTGCAAAATGAAGAACCATCAAAGCAGAGAAACGGGTCTGTTTTGACTCCGAAAACATTAAGAATTGATGACCCGAATGAAGCTGCAAAGAGTTCTATATGGGCAACTCTAGGAATCAAGAATGAGTCACTCAGTGGTGGAAGCATGTTTAAGGCCTTCAAATCAACAAAGGGTGATGAAAAGAACCATGTAGACTCTTCAGTGTTGCGGGCTAACCCTGCAGCATTGTCAAGATCCCTTAACTTTCATGAGAACTCCTGA 1413 0.4487 MQQVRDPAIRLFGQKISRTEDADDTGFSGAGCINIDKEEEQQQYRDGGGGIGQNPEEEKDPIDNEDSGSENGNEKEQEADLPPANEEETKNSSTSPGAVVNPETPSIEEETAKSKSEQSDPAQSQEKTTLKKPDKVIPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTSGGTMRNVPVGAGRRKNKNSSSHFGHISISEALQAARIDAHDGTTHLPALKTNGRVLSFGLDGPICDSMTSVLNLGENKVLNQTLPVPCKSGENGDDCSSATSSITVSSSVGESNKSSIQNNGFIPQLPCIPSVPWPYYTWNTTSVPSPAMCPSGFLYPAAFWNCSMPGNWNVPWFPSNPSTSNPNSPSSGPNSPTLGKHSRDVDDVSEKDSLQNEEPSKQRNGSVLTPKTLRIDDPNEAAKSSIWATLGIKNESLSGGSMFKAFKSTKGDEKNHVDSSVLRANPAALSRSLNFHENS* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2141 470 MobiDBLite consensus disorder prediction 1 136 - -
Lja4g2141 470 MobiDBLite consensus disorder prediction 371 389 - -
Lja4g2141 470 ProSitePatterns Zinc finger Dof-type signature. 139 175 IPR003851 GO:0003677|GO:0006355
Lja4g2141 470 PANTHER CYCLIC DOF FACTOR 1 1 469 - -
Lja4g2141 470 MobiDBLite consensus disorder prediction 86 101 - -
Lja4g2141 470 MobiDBLite consensus disorder prediction 65 85 - -
Lja4g2141 470 Pfam Dof domain, zinc finger 134 191 IPR003851 GO:0003677|GO:0006355
Lja4g2141 470 ProSiteProfiles Zinc finger Dof-type profile. 137 191 IPR003851 GO:0003677|GO:0006355
Lja4g2141 470 MobiDBLite consensus disorder prediction 352 369 - -
Lja4g2141 470 MobiDBLite consensus disorder prediction 352 406 - -
Lja4g2141 470 PANTHER CYCLIC DOF FACTOR 2 1 469 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2141 Lja-Chr4 22968548 22971116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2141 1 468 C2C2-Dof Transcription Factor Family AT3G47500 45.652 9.90e-110 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja4g2141 zf-Dof 4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2141 - - gmx:778113 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5531 1 95575368 95578386 Lja4g2141 4 22968548 22971116 ECH
Lja1g2848 1 34280286 34284001 Lja4g2141 4 22968548 22971116 ECH
Lja2g1169 2 11093820 11097163 Lja4g2141 4 22968548 22971116 ECH
Lja4g2141 4 22968548 22971116 Lja4g2141 4 22968548 22971116 ECH
Lja2g1169 2 11093820 11097163 Lja4g2141 4 22968548 22971116 PCT