Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2065 ATGGGAAGAGGGAAAGTTGAACTGAAGAGGATAGAGAACAAAATTAACAGGCAAGTGACTTTTGCCAAGAGAAGAAATGGGATACTCAAGAAGGCTTATGAGCTCTCTGTTCTCTGTGATGCTGAGGTTGCTCTCATCATCTTCTCCAACCGTGGGAAGCTCTATGAGTTCAGCAGCACCTCCAGCATAATGAAAACACTGGAAAAATACCAGAAGTACAGTTACAGTGCACTAGAGTCCAGCAGTCCAACCAATGATACTCAGAACTACCAGGAATATGTGAGACTAAAAGCAAGGGTAGAAAACCTGCAACGTTCACAAAGGAACCTTCTCGGAGAAGATATTGCTCAAATGAATACAACTCAGCTGGAGCAGCTTGAGAATCAATTGGAGGTAGCATTGAGGAACATCAGGTCAACAAAGACTCAATTCATGCTTGACCAGCTCGCTGATCTTCACAACAAGGAAGCAGTGCTAGTCGAAACTAATCATGTGTTAAGGAACAAGTTGGAAGAAAGTAATAACTCACATAATCCAGTGGTCAGATTGGCTTTGGAAGCTGGAGTGCCTAACATCCATTACACTCGCTTCCCTCCTCAATCAGAGGGGTTTTTCCAGCATATGGGAGTGAATCCAAACTTGCAAATTGGGTACAATCCCAGCCATGATGATGTAAATGCTGGAGCTTCATCCTTAAATATGCATGGATTCGCCTCTGGGTGGATGCTGTGA 732 0.4372 MGRGKVELKRIENKINRQVTFAKRRNGILKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSIMKTLEKYQKYSYSALESSSPTNDTQNYQEYVRLKARVENLQRSQRNLLGEDIAQMNTTQLEQLENQLEVALRNIRSTKTQFMLDQLADLHNKEAVLVETNHVLRNKLEESNNSHNPVVRLALEAGVPNIHYTRFPPQSEGFFQHMGVNPNLQIGYNPSHDDVNAGASSLNMHGFASGWML* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2065 243 Coils Coil 93 113 - -
Lja4g2065 243 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Lja4g2065 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lja4g2065 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Lja4g2065 243 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Lja4g2065 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja4g2065 243 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lja4g2065 243 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 228 - -
Lja4g2065 243 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja4g2065 243 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja4g2065 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja4g2065 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lja4g2065 243 Coils Coil 116 143 - -
Lja4g2065 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja4g2065 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja4g2065 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2065 Lja-Chr4 22181658 22188382 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja4g2065 K-box 2.1e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2730 1 32558823 32567401 Lja4g2065 4 22181658 22188382 ECH
Lja2g1509 2 14647424 14651485 Lja4g2065 4 22181658 22188382 ECH
Lja4g2065 4 22181658 22188382 Lja4g2065 4 22181658 22188382 ECH