Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2058 ATGCAGGAAATACATCCAATCGGAGGAGGTGGCGGTGGTGGTGGAGGAAGCAGGTTCTTCGGCGGTGCTGACAGGAGGCTCCGACCTCACCACCAACAGAACAACCAGGCTCTCAAGTGCCCCCGCTGTGACTCCATCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCTCAGCCCCGCCACTTCTGCAAAAACTGCCGCCGTTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGTGGCTGCCGGAAGTCCACCAAACGCTCCAGTAAGCCCAAAAACTCTTCCTCGTCGGAAACCACCGATCTCCAGCTGCCAGAGCCAGAGCACAACTCCAACTCTCATTCCAGTAGCGAGAGCTCCAGCCTCACCGCCGCCGTAACGGAAGCCGTTTCAGCTCCGGCGTTGAACTCCGACCCGAATTCCAACAACATGCACGAGTCGAAATTGTTGAACTCTGTTCTGGATGCGAATGCTCTGGAACAAGCAGGAACAGGGGACTGTGGCGGCGGTGGTATTTTCTCCGAGATTGGGAACTTCACCAGCTTGATCGCTTCATCTTCCACCACCAACGATGCATTGGCTTTCGGATTCGGCAACAACAACGGTATTCCACCTGATGCATCGTCGTTTCAGTGGCAGCACCATCACCCAGGAGAACAAGAACTAAAGTTGCAGGGGAATATTCTCAGTGCCGCCGCCGGCGGCAACGGCGGAGGATTTGGATCGTTGGATTGGCATAGCGGTGGTGCGGATCATCAAGGTTTGTTTGATCTTCCTAACACAGTTGATCAGGCTTACTGGAATCACACTCACTGGTCTGATCATGACAATTCCACTCTCTTTCATCTTCCATGA 873 0.5452 MQEIHPIGGGGGGGGGSRFFGGADRRLRPHHQQNNQALKCPRCDSINTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSTKRSSKPKNSSSSETTDLQLPEPEHNSNSHSSSESSSLTAAVTEAVSAPALNSDPNSNNMHESKLLNSVLDANALEQAGTGDCGGGGIFSEIGNFTSLIASSSTTNDALAFGFGNNNGIPPDASSFQWQHHHPGEQELKLQGNILSAAAGGNGGGFGSLDWHSGGADHQGLFDLPNTVDQAYWNHTHWSDHDNSTLFHLP* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2058 290 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 19 277 IPR045174 GO:0003700|GO:0006355
Lja4g2058 290 MobiDBLite consensus disorder prediction 1 25 - -
Lja4g2058 290 ProSiteProfiles Zinc finger Dof-type profile. 38 92 IPR003851 GO:0003677|GO:0006355
Lja4g2058 290 Pfam Dof domain, zinc finger 36 92 IPR003851 GO:0003677|GO:0006355
Lja4g2058 290 MobiDBLite consensus disorder prediction 96 132 - -
Lja4g2058 290 MobiDBLite consensus disorder prediction 83 132 - -
Lja4g2058 290 ProSitePatterns Zinc finger Dof-type signature. 40 76 IPR003851 GO:0003677|GO:0006355
Lja4g2058 290 PANTHER DOF ZINC FINGER PROTEIN 4 19 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2058 Lja-Chr4 22102974 22104710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2058 24 290 C2C2-Dof Transcription Factor Family AT5G60850 40.972 4.35e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja4g2058 zf-Dof 1.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2058 - - gmx:100800458 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2058 4 22102974 22104710 Lja4g2058 4 22102974 22104710 ECH