Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1237 ATGAATCTATCACAGCCCTTAGTTGAGAAACTAACAACATTGATGACCTCTGATCATGCTTCAGTTGTCTCTATCACTCTATTTGTTGCTCTTCTTTGCACTTGCATCATAATTGGTAATTTGTTGGAGGAGAATCGTTGGATCAATGAATCCATCACTGCCCTCCTCATTGGTCTCTGTACTGGGGTTCTTATACTGTTTACAACCGGAGGAAAAAGCTCTCATATATTAGTTTTCGATGAAGATCTTTTCTTTAACTACCTTCTCCCTCCCATCATTTTCAATGCTGGGTTTCGGGTCAAGAAGAAACAATTTTTTCGCAACTTTATGACCATAATGCTCTTTGGTGCAATTGGTACATTGATATCATTCTGCATCATATCATTAGGTGCCATACACTTTTTTGAGAAACTAGGTATTGGTTCCCTCAGTATTGGAGACTATCTAGCAATTGGAGCAATATTTTCTGCAACAGATTCTGTTTGCACATTGCAGGTTCTTAATCAGGATACAACACCTTTACTATACAGCCTGGTCTTTGGGGAGGGGGTAGTAAATGATGCTACCTCTGTAGTACTCTTCAAAGCAATTCAGAATTTTGACCTCTCCCACATTGACTTAACCACTGCTTTACAATTAATTGGAAAATTTTCATATTTATTCATTGCAAGCACTTTACTTGGAATCTTGGTTGGATTGCTTAGTGCATACATTATAAAAAAGCTTTATTTTGGGAAGTTGATAAGGCATTCTACCGTGCGTGAGGTTGCTCTCATGATACTCATGGCATACCTTTCATATATGCTAGCTGAACTGTTTTCTCTAAGTGCCATTCTGACTGTGTTCTTCTGCGGCATTGTTATGTCTCACTACACATGGCATAATGTGACAGAAAGTTCAAGAGTGACAACCAAGCATGCTTTCGCTACTTTGTCATTCATTGCTGAGATTTTTCTCTTCCTTTATGTTGGGATGGATGCACTAGATATAGAGAAGTGGAGAATAGTAAGTCAAAGCCCAAGAAAATCAATTGGGGTGAGCTCATTGCTGTTGGCACTTATCCTAGTGGGAAGAGCTGCATTTGTTTTCCCTTTGTCCTTCTTATCCAACTTGTTTACGAAGTCTCCATCTGAGAAAATTGAATTCAAGCAACAAGTAACAATTTGGTGGGCTGGTCTCATGCGTGGAGCTGTTTCCATAGCACTTTCCTACAATCAGTTTACCAAGCTAGACCATACTAAGTTGAGTGAGAAAGCCATCATGATCACTAGTACCATCACTGTTGTACTCTTCAGCACATTGGTGTTCGGATTGATGACAAAGCCACTAGTGAGGTTATTGCTTCCTTCGTCGAAATACATACTCATCATACAATCCCCACCACCGACGCCAAAATCATTGACTCTGCCACTTCTTGGCAATGTACATGATTCAGGTGACACCGAAAATGGGACTCAACCAAGCAACCTGCACCACTATTGGCGCAAATTTGATGATTCTGTCATGCGACCCGTCTTTGGTGGGAGGGGTTTTGTACCTTATGTTCCTGGTTCACCCGTTGAATAA 1566 0.4042 MNLSQPLVEKLTTLMTSDHASVVSITLFVALLCTCIIIGNLLEENRWINESITALLIGLCTGVLILFTTGGKSSHILVFDEDLFFNYLLPPIIFNAGFRVKKKQFFRNFMTIMLFGAIGTLISFCIISLGAIHFFEKLGIGSLSIGDYLAIGAIFSATDSVCTLQVLNQDTTPLLYSLVFGEGVVNDATSVVLFKAIQNFDLSHIDLTTALQLIGKFSYLFIASTLLGILVGLLSAYIIKKLYFGKLIRHSTVREVALMILMAYLSYMLAELFSLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFIAEIFLFLYVGMDALDIEKWRIVSQSPRKSIGVSSLLLALILVGRAAFVFPLSFLSNLFTKSPSEKIEFKQQVTIWWAGLMRGAVSIALSYNQFTKLDHTKLSEKAIMITSTITVVLFSTLVFGLMTKPLVRLLLPSSKYILIIQSPPPTPKSLTLPLLGNVHDSGDTENGTQPSNLHHYWRKFDDSVMRPVFGGRGFVPYVPGSPVE* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1237 521 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 24 447 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lja4g1237 521 Gene3D - 145 196 - -
Lja4g1237 521 PANTHER SODIUM/HYDROGEN EXCHANGER 7 521 IPR018422 GO:0006812|GO:0015299|GO:0016021
Lja4g1237 521 Pfam Sodium/hydrogen exchanger family 28 445 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lja4g1237 521 PRINTS Na+/H+ exchanger signature 112 120 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lja4g1237 521 PRINTS Na+/H+ exchanger signature 152 162 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lja4g1237 521 PRINTS Na+/H+ exchanger signature 83 94 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lja4g1237 521 PRINTS Na+/H+ exchanger signature 97 111 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lja4g1237 521 PANTHER SODIUM/HYDROGEN EXCHANGER 3 7 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1237 Lja-Chr4 10969210 10973262 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1237 1 521 Antiporters AT3G05030 69.630 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1237 - - gmx:100791224 872.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1237 4 10969210 10973262 Lja4g1237 4 10969210 10973262 ECH