Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1162 ATGGAGAACAGCCCACTTCAGCTTTTGCCTCATCTCATTGTCACACTTCTTTTGATAACTATTTTGCTTCCCACAACTGAAGAAGGTGGAGCAGTTTCTTCCATCAAAACTGATGCACAGGCTCTTCTTTATTTCAAAAAGATGATTCAGAAGGATCCAGATGGAGTTTTGTCAGGGTGGAAGCTCAGTAGGAATCCATGCACCTGGTATGGAGTTTCTTGCACTCTAGGAAGAGTTACTGGGATTGATATCAGTGGGAATAACAATCTTGTTGGGATTATTTCTCTTGATCCTCTTTCTTCTTTAGACATGTTATCTGTTCTGAAACTGTCTCTGAATTCATTTTCTGTAAATTCCACTTCTCTGCTTCAGCTTCCATATAGTTTGACACAGCTTGATCTGTCCTTTGGTGGAGTTACAGGTCCTATCCCTGAGAATCTTTTCTCCAGTTGTCCAAACCTGGTTGTTGTGAATCTTTCTTACAACAACTTGACAGGTCCAATTCCTCAAAATTTCCTGCAAAATTCTGATAAGCTTCAATCCCTTGACATCTCTTCCAACAACTTGTCAGGCTCAATTTCTGGTTTAAAAATTGAGTGCAGTTCCTTGTTGCAGCTTGATCTATCTGGCAACCATTTATCAGACTCAATTCCCATCTCTTTGTCAAACTGCACCAGCCTTAAGAGCTTGAACTTGGCCAATAATTTCATTTCTGGGGGAATCCCAAAGGATTTGGGTCAGCTGAACAAGCTTCAGACTTTGGATCTTTCACACAATCAAATCACAGGATGGATCCCTTCAGAATTTGGAAATGCTTGTGCTTCACTTTTAGAGCTTAGGCTCTCTTTCAACAACATATCAGGCTCAATCCCAACTAGCTTCTCTTCTTGCACTTGGCTTCAAGTTCTTGAGATTGCTAACAACAACATGTCAGGGGAATTACCAGAGTCAATCTTTCATAGCCTTGGATCATTGCAGGAACTGAGGTTGGGAAATAATGCTATCTCAGGGAAATTTCCATCTTCAATATCATCCTGCAAGAAACTGAGGATTGTGGACTTCAGCTCAAATAAAATCTATGGATCTATCCCCAGAGATTTATGTCCAGGAGCAGGTTCCCTTGAGGAGCTTAGAATGCCAGATAATCTCATTTCAGGTGAAATCCCAGCTGAACTTTCAAAATGCTCTCAACTGAAGACACTTGATTTCAGCTTAAACTACCTCAACGGTTCAATCCCTGATGAGCTTGGACAGCTTGAGAATCTTGAGCAGCTAATAGCATGGTTCAATGGCTTGGAAGGAAGGATTCCACCAAAATTGGGCCAGTGCAAGAATCTCAAGGATCTTATACTGAACAACAATCACCTCGGTGGTGGAATTCCCATTGAGCTTTTCAATTGCAGCAACCTTGAATGGATATCACTCACAAGCAATGAGCTCAGTGGTGAGATACCTCCAGAGTTTGGCCTCTTGACAAGGCTAGCAGTTCTGCAGCTTGGAAATAATAGTTTGAGTGGTGAAATTCCATCAGAGCTTGCAAATTGTAGCAGCTTGGTGTGGTTGGATTTGAACAGCAACAAGCTCACAGGAGAGATCCCTCCAAGGCTTGGAAGACAGATAGGAGCAAAATCATTGTTTGGAATCCTCTCAGGGAACACTTTGGTGTTTGTGAGAAATGTTGGAAACTCATGTAAAGGAGTTGGAGGGTTGCTAGAATTCTCTGGAATTAGACCTGAAAGGCTCTTGCAGGTGCCAACATTAAGGACTTGTGATTTCACTAGGCTCTATTCTGGTCCTGTGCTTAGTTTATTCACTAAGTACCAGACTTTGGAGTATCTTGATCTTTCCTACAACCAGCTTCGTGGAAGAATCCCGGAAGAGTTTGGAGACATGGTGGCTTTGCAGGTTCTTGAATTGTCTCACAATCAGCTATCTGGTGAAATCCCTTCATCACTAGGCCAGCTAAAAAATTTAGGAGTGTTTGATGCATCGAATAATAGATTTCAGGGTCATATCCCTGACTCATTCTCAAACCTCTCATTCTTAGTGCAGATTGATCTTTCTAACAATGAGTTAACAGGGCAAATTCCATCTAGGGGACAATTAAGCACACTTCCAGCTTCTCAGTATGCAAATAATCCAGGTCTTTGTGGTGTTCCATTGCCTGACTGCAAGAATGAAAACACCAATCCCACAACAGATCCAAGTGAAGATGCTAGTAGAAGCCATAGAAGATCAACAGCACCATGGGCAAACAGCATTGTCATGGGGATTCTCATCTCTGTTGCTTCTATATGCATTTTGATTGTGTGGGCAATTGCAGTGAATGCAAGGAGGAGGGAGGCTGAGGAGGTGAAAATGCTTAATAGCTTGCAAGCATGTCATGCTGCAACAACATGGAAAATTGACAAAGAGAAAGAGCCATTAAGCATCAATGTAGCAACATTTCAAAGGCAGCTTAGGAAGCTGAAATTTTCACAGTTGATTGAAGCAACCAATGGGTTCTCAGCAGAAAGCCTAATCGGGTGCGGAGGTTTCGGTGAAGTATTCAAGGCCACACTCAAAGATGGTTCATGTGTTGCTATCAAGAAGCTCATTAGATTAAGCTGCCAGGGTGATAGAGAATTCATGGCTGAGATGGAAACCTTAGGGAAAATCAAGCACAGAAACCTTGTCCCTTTGTTAGGGTACTGCAAAGTAGGGGAAGAGAGGCTCCTTGTATATGAATACATGGAGTATGGAAGCCTAGAAGAGATGCTTCACGGGAGAACAAAGACACGCGATCGACGAATCCTAACATGGGAAGAAAGGAAAAAAATTGCAAGAGGTGCTGCTAAAGGACTTTGTTTTCTCCACCACAATTGCATCCCTCACATCATCCACAGAGACATGAAATCAAGCAATGTGCTGCTTGATCATGAAATGGAGTCCAGGGTCTCTGATTTTGGAATGGCGAGATTAATAAGTGCACTTGACACACATCTCAGTGTGAGCACATTAGCAGGAACACCAGGCTATGTTCCACCAGAGTACTATCAAAGCTTCAGGTGCACTGCAAAAGGTGATGTTTACTCATTTGGTGTTGTGATGTTGGAACTTCTCAGTGGGAAACGCCCTACCGATAAAGAGGATTTTGGTGACACTAACTTGGTGGGGTGGGCGAAGATGAAGGTTCGCGAAGGAAAACAAATGGAGGTGATTGACAATGATATGCTTTTGGAGACTCAAGGATCAACAGATGAAGCTGAAGTTAAAGAAGTGAAAGAGATGATACGATATTTGGAGGTTACTTTGCGGTGTGTTGATGACTTGCCTTCTAGAAGGCCAAGCATGTTGCAGGTTGTAGCCCTGCTGAGAGAGCTTATACCTGGATCAGATGGAAGCAGCAACAGTGCTTGA 3399 0.4266 MENSPLQLLPHLIVTLLLITILLPTTEEGGAVSSIKTDAQALLYFKKMIQKDPDGVLSGWKLSRNPCTWYGVSCTLGRVTGIDISGNNNLVGIISLDPLSSLDMLSVLKLSLNSFSVNSTSLLQLPYSLTQLDLSFGGVTGPIPENLFSSCPNLVVVNLSYNNLTGPIPQNFLQNSDKLQSLDISSNNLSGSISGLKIECSSLLQLDLSGNHLSDSIPISLSNCTSLKSLNLANNFISGGIPKDLGQLNKLQTLDLSHNQITGWIPSEFGNACASLLELRLSFNNISGSIPTSFSSCTWLQVLEIANNNMSGELPESIFHSLGSLQELRLGNNAISGKFPSSISSCKKLRIVDFSSNKIYGSIPRDLCPGAGSLEELRMPDNLISGEIPAELSKCSQLKTLDFSLNYLNGSIPDELGQLENLEQLIAWFNGLEGRIPPKLGQCKNLKDLILNNNHLGGGIPIELFNCSNLEWISLTSNELSGEIPPEFGLLTRLAVLQLGNNSLSGEIPSELANCSSLVWLDLNSNKLTGEIPPRLGRQIGAKSLFGILSGNTLVFVRNVGNSCKGVGGLLEFSGIRPERLLQVPTLRTCDFTRLYSGPVLSLFTKYQTLEYLDLSYNQLRGRIPEEFGDMVALQVLELSHNQLSGEIPSSLGQLKNLGVFDASNNRFQGHIPDSFSNLSFLVQIDLSNNELTGQIPSRGQLSTLPASQYANNPGLCGVPLPDCKNENTNPTTDPSEDASRSHRRSTAPWANSIVMGILISVASICILIVWAIAVNARRREAEEVKMLNSLQACHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAESLIGCGGFGEVFKATLKDGSCVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEYMEYGSLEEMLHGRTKTRDRRILTWEERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHEMESRVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVMLELLSGKRPTDKEDFGDTNLVGWAKMKVREGKQMEVIDNDMLLETQGSTDEAEVKEVKEMIRYLEVTLRCVDDLPSRRPSMLQVVALLRELIPGSDGSSNSA* 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1162 1132 PRINTS Leucine-rich repeat signature 179 192 - -
Lja4g1162 1132 PRINTS Leucine-rich repeat signature 248 261 - -
Lja4g1162 1132 SUPERFAMILY L domain-like 37 271 - -
Lja4g1162 1132 ProSitePatterns Serine/Threonine protein kinases active-site signature. 959 971 IPR008271 GO:0004672|GO:0006468
Lja4g1162 1132 SUPERFAMILY RNI-like 218 535 - -
Lja4g1162 1132 Gene3D Ribonuclease Inhibitor 151 724 IPR032675 -
Lja4g1162 1132 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Lja4g1162 1132 ProSiteProfiles Leucine-rich repeat profile. 250 271 IPR001611 GO:0005515
Lja4g1162 1132 SUPERFAMILY L domain-like 574 720 - -
Lja4g1162 1132 SMART LRR_typ_2 516 539 IPR003591 -
Lja4g1162 1132 SMART LRR_typ_2 200 224 IPR003591 -
Lja4g1162 1132 SMART LRR_typ_2 491 515 IPR003591 -
Lja4g1162 1132 SMART LRR_typ_2 322 346 IPR003591 -
Lja4g1162 1132 SMART LRR_typ_2 444 467 IPR003591 -
Lja4g1162 1132 SMART LRR_typ_2 419 443 IPR003591 -
Lja4g1162 1132 SMART LRR_typ_2 248 271 IPR003591 -
Lja4g1162 1132 SMART LRR_typ_2 631 655 IPR003591 -
Lja4g1162 1132 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 27 1121 - -
Lja4g1162 1132 Gene3D Transferase(Phosphotransferase) domain 1 911 1128 - -
Lja4g1162 1132 Gene3D - 549 605 - -
Lja4g1162 1132 SUPERFAMILY Protein kinase-like (PK-like) 816 1118 IPR011009 -
Lja4g1162 1132 Pfam Protein kinase domain 837 1115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1162 1132 Gene3D Ribonuclease Inhibitor 37 150 IPR032675 -
Lja4g1162 1132 SMART serkin_6 835 1122 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1162 1132 Pfam Brassinosteroid receptor island domain 546 604 IPR045381 -
Lja4g1162 1132 Pfam Leucine rich repeat 203 261 IPR001611 GO:0005515
Lja4g1162 1132 Pfam Leucine rich repeat 300 359 IPR001611 GO:0005515
Lja4g1162 1132 Pfam Leucine rich repeat 128 189 IPR001611 GO:0005515
Lja4g1162 1132 Pfam Leucine rich repeat 603 644 IPR001611 GO:0005515
Lja4g1162 1132 CDD STKc_IRAK 841 1121 - -
Lja4g1162 1132 Gene3D Phosphorylase Kinase; domain 1 795 910 - -
Lja4g1162 1132 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 27 1121 - -
Lja4g1162 1132 ProSiteProfiles Protein kinase domain profile. 835 1122 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1162 1132 MobiDBLite consensus disorder prediction 721 746 - -
Lja4g1162 1132 ProSitePatterns Protein kinases ATP-binding region signature. 841 864 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1162 Lja-Chr4 10322743 10326416 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1162 42 1121 Receptor kinase-like Gene Family AT1G55610 48.752 0.0 1002
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Lja4g1162 Pkinase 3.5e-43 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1162 4 10322743 10326416 Lja4g1162 4 10322743 10326416 ECH