Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1161 ATGTTAGACAATACTGCTTCTTCTTCTGGTGCACCATCTTCTTCTGATATTGCTGCTTTTGCATTATCAGAAAATGGAGTGCTTAACAACAAAAGAAAAAGAAGACCAGCAGGCACACCAGATCCAGATGCTGAGGTGGTGTCCCTCTCACCCAAGACCTTACTAGAATCAGACAGGTATGTGTGTGAGATCTGCAACCAAGGCTTTCAGAGGGACCAGAATCTGCAAATGCACAGGAGAAGGCACAAGGTGCCATGGAAACTCCTGAAAAGAGAAACCACACAAGGGCAGAAGAAAAGGGTGTTTGTGTGCCCTGAGCCAAGTTGTTTGCACCATGACCCTTGCCATGCCCTTGGTGACCTTGTTGGAATCAAGAAACACTTCAGGAGGAAGCACAGCAATCACAAGCAGTGGGTTTGTGACAAATGTAACAAAGGGTATGCTGTGCAATCTGATTACAAGGCGCATGTCAAAACATGTGGTACCAGAGGGCACTCGTGTGACTGTGGCCGTGTGTTTTCCAGGGTGGAGAGTTTCATAGAACATCAAGATACATGCAATATGCGGCTGCCACGGCAAGAGTTACAAGCACTTCAACCTGCATGCTCTTCTAGAACAGCTTCAAGCACAAGTCCATCAAATGAGGCCAATTTTAGCATAGCCCCATTGCAAGGACTTCCACTGCCAAAACCACCACCAGCTGATCAGCCATCAACTTCAAACACACACAACTTAGAACTTCAGCTCTTATCACCTTCTTCAACAATCCCCAAAGAAAATAGAAATCCCAGGGAAAACCATAATGAGACCCGTTTGAAGCTCTCAATAGGTTCATGTACTAATAATGATGGTCACATAGGGAATGAAGAATCAGAAAGGAATAATAATAATAATGTTGTGGGTGATAATTCCATTTTCGAAGTGGCAAGGCTGAAAGAGTTTGCTGGTGAGGAACTCAAGTTGGCGATGGCGGAGAAGGCTTACGCGGAAGAGGCTAGGAGAGAAGCGAAGCGCCAAATTGAGATAGCTGAGGTTGAGTTTGAGAATGCTAAGAGGATAAGGAAACAAGCGCAAGCTGAGCTTGGAAAAGCTGAAGATTTGAGAAAGCAAGCAATGAAGAAGATTAGCTCCACTGTTATGGAAATAACTTGTCAAGCTTGCAAGCAGCAGTTTCAGAACTCAACTGTTGCATCAGATCAAGAAACTTCCATTGTGGTGAGTTACGTGTCCTCAGCCAACACAGAAGGCGAAGCTGCAGAAGAATGA 1266 0.4494 MLDNTASSSGAPSSSDIAAFALSENGVLNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETTQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQSDYKAHVKTCGTRGHSCDCGRVFSRVESFIEHQDTCNMRLPRQELQALQPACSSRTASSTSPSNEANFSIAPLQGLPLPKPPPADQPSTSNTHNLELQLLSPSSTIPKENRNPRENHNETRLKLSIGSCTNNDGHIGNEESERNNNNNVVGDNSIFEVARLKEFAGEELKLAMAEKAYAEEARREAKRQIEIAEVEFENAKRIRKQAQAELGKAEDLRKQAMKKISSTVMEITCQACKQQFQNSTVASDQETSIVVSYVSSANTEGEAAEE* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1161 421 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Lja4g1161 421 Gene3D Classic Zinc Finger 38 104 - -
Lja4g1161 421 Pfam Zinc finger, C2H2 type 60 82 IPR013087 -
Lja4g1161 421 Gene3D Classic Zinc Finger 123 200 - -
Lja4g1161 421 MobiDBLite consensus disorder prediction 200 220 - -
Lja4g1161 421 SUPERFAMILY beta-beta-alpha zinc fingers 59 158 IPR036236 -
Lja4g1161 421 PANTHER OS03G0310200 PROTEIN 1 418 IPR039288 GO:0009630
Lja4g1161 421 MobiDBLite consensus disorder prediction 24 48 - -
Lja4g1161 421 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 1 418 - -
Lja4g1161 421 Coils Coil 319 374 - -
Lja4g1161 421 SMART c2h2final6 102 132 IPR013087 -
Lja4g1161 421 SMART c2h2final6 138 165 IPR013087 -
Lja4g1161 421 SMART c2h2final6 60 82 IPR013087 -
Lja4g1161 421 MobiDBLite consensus disorder prediction 237 259 - -
Lja4g1161 421 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Lja4g1161 421 MobiDBLite consensus disorder prediction 200 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1161 Lja-Chr4 10311981 10315042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1161 24 417 C2H2 Transcription Factor Family AT2G01940 59.048 9.03e-156 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja4g1161 zf-C2H2 0.0039 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1161 4 10311981 10315042 Lja4g1161 4 10311981 10315042 ECH