Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1124 ATGGAAAAATCCAAAAGCTTTCTCCATAGTCTTGCTAATCACTTCAAATTTGGTTCCAACAGAGAGCGAAGCAATGAAGCTGACATTCAGAGAATAACTGCACAGGAGCAGAAGATCTTTGCCTATGACACCTTGCTTGCTGCCACCAAGAATTTTAACCCTGTTCATAAGCTAGGTGAGGGAGGTTTTGGTCCTGTTTTCAAGGGGAAGTTGAGTGATGGTAGAGAAATTGCAGTGAAGAAGTTATCTCTCACATCAAAGCAAGGGAAGAAGGAGTTCATCAATGAGGCCAAGTTGTTGGCTCGTGTGCAGCATCGGAATGTGGTGAATTTATGGGGTTACTGCGTCTATGGTGCAGAAAAGCTGCTTGTTTATGAGTATGTGCCTCATGAGAGCCTTGACAAACTTCTATTCAATCCTCATAAGAGAGAGCAGCTAGATTGGAAACGCAGGTTTGGCATAATCACGGGTGTAGCGAAAGGCTTGCTCTATCTCCATGAAGATTCGCATGATTGCATCATCCATCGTGACATAAAAGCTAGTAACATATTGCTTGATGATAAATGGACACCCAAGATTGCTGACTTTGGCATGGCCCGTCTCTTCCCTGAAGATCAAACCCAGGTCAATACACGTGTGGCTGGAACCAATGGGTACATGGCACCAGAGTATATGATGCATGGAAAGCTCTCTGTGAAGGCAGACGTGTTCAGTTACGGGGTTTTGGTGTTGGAGTTGATCACCGGACAGCGAAACTCATCGTTTAATTTGGACGTGGACGCACTGAGTCTTCTCGACTGGGCATACAAGATGTACAAGAAAGGGAAGAGCTTAGACATTGTAGACCCTTCATTAGCATCAACGATGGAAGCAGAGCAAGTATCAACATGTATTCAGCTGGCTCTGCTGTGCACTCAGGGCGATCCACAGCTACGCCCGACAATGAGGCGTGTGGTGGTGATGCTGTCAAGGAAGCCAGGCCACAACCACGTGGAAGAACCGACGAGACCGGGAGTGCCCGGTAGCCGGTATAGAAGACCTCGCCGGCACTCAGCGTTGTCTTCCACCGGTGGTACCTCTGGTTCACACTCTTCTGACTCAAGCTACAATAGTACCTCTGGTACTGTTACTGCAACGGGAACAAGCTCAGCCACTGCAAATATAGTAGACTCAAGAGGTAAAAGTCCAATTCTGGGTTAG 1200 0.4717 MEKSKSFLHSLANHFKFGSNRERSNEADIQRITAQEQKIFAYDTLLAATKNFNPVHKLGEGGFGPVFKGKLSDGREIAVKKLSLTSKQGKKEFINEAKLLARVQHRNVVNLWGYCVYGAEKLLVYEYVPHESLDKLLFNPHKREQLDWKRRFGIITGVAKGLLYLHEDSHDCIIHRDIKASNILLDDKWTPKIADFGMARLFPEDQTQVNTRVAGTNGYMAPEYMMHGKLSVKADVFSYGVLVLELITGQRNSSFNLDVDALSLLDWAYKMYKKGKSLDIVDPSLASTMEAEQVSTCIQLALLCTQGDPQLRPTMRRVVVMLSRKPGHNHVEEPTRPGVPGSRYRRPRRHSALSSTGGTSGSHSSDSSYNSTSGTVTATGTSSATANIVDSRGKSPILG* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1124 399 PANTHER RECEPTOR-LIKE KINASE 3 379 - -
Lja4g1124 399 Gene3D Transferase(Phosphotransferase) domain 1 128 334 - -
Lja4g1124 399 Pfam Protein kinase domain 54 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1124 399 SUPERFAMILY Protein kinase-like (PK-like) 37 327 IPR011009 -
Lja4g1124 399 CDD STKc_IRAK 58 324 - -
Lja4g1124 399 Gene3D Phosphorylase Kinase; domain 1 14 127 - -
Lja4g1124 399 MobiDBLite consensus disorder prediction 323 399 - -
Lja4g1124 399 MobiDBLite consensus disorder prediction 352 390 - -
Lja4g1124 399 SMART serkin_6 52 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1124 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Lja4g1124 399 ProSiteProfiles Protein kinase domain profile. 52 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1124 399 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1124 Lja-Chr4 9910213 9913731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1124 32 338 Receptor kinase-like Gene Family AT4G11530 51.456 4.09e-110 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja4g1124 Pkinase 7.1e-50 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1124 4 9910213 9913731 Lja4g1124 4 9910213 9913731 ECH