Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1122 ATGGGTACCCTTCAGTCTTGGAGAAGAGCTTACGGTGCCATCAAAGACACCACCAAAGTGGGTCTTGCCCATGTCAACAGCGATTACGCCGATTTGGATGTTGCCATAGTCAAAGCCACCAACCACGTTGAGTGTCCTCCCAAAGAGAGACATCTAAGAAAGATTCTGTTTGCCACTTCTGCTATTAGGCCTAGGGCTGATGTTGCTTACTGCATTCACGCTCTTTCTCGGCGGTTGGCCAAGACGCGGAATTGGACGGTAGCGTTAAAAACACTGATAGTCATCCATAGGTTATTGAGGGAGGGTGATCCAACTTTTCGAGAAGAACTTCTGAATTTCTCACAGAGAGGACGGATTCTCCAAATTTCAAATTTTAAGGATGATTCTAGTCCAATTGCTTGGGATTGTTCTGCCTGGGTACGTACGTATGCATTATTTTTGGAAGAAAGGCTTGAATGTTTTCGGATTCTGAAGTATGATATTGAAGCTGAGCGTCTACCCAAGCCTGCCCCAGGGCAGGAGAAGGGTTACAGCCGGACCAGGGATTTGGACAGTGAGGAGCTATTGGAACAGTTGCCTGCTTTGCAGCAGTTGCTATATCGACTTGTTGGTTGCCGGCCAGAAGGAGCTGCTGTTAGCAATTATGTGATACAATACGCACTAGCTCTGGTACTGAAAGAGAGCTTCAAGATTTATTGTGCTATCAATGATGGCATTATCAATCTTGTTGATAAGTTTTTTGAGATGCCCAGACATGAAGCTATTAAAGCCCTTGAAGCCTATAAACGTGCGGGTCAGCAGGCATTAAACCTCTCTGATTTCTATGAAGTTTGCAAAGGATTGGAACTTGCTCGGAATTTTCAGTTTCCTGTCTTAAGAGAGCCTCCACAATCTTTTCTTACAACCATGGAAGAGTACATCAAGGAGGCTCCACGAGTGGTTACAGTTCCAAGTGAGCCAATGCTTCAGTTGACTTACAGACCCGATGAGGTTCTTGCAATTGAAGACACCAAATCACCTGAAGAAGAGGAGACATCAGTTCCTATTGATAATAATGTTGTGGTCCCCAATTCTGAGCCTGCACCTCCTCCTCCACCAACACTACCTCAAAACAATTTTGACACGGGAGATCTACTGGGATTGAATGACATAGCACCTAATGCATCAGCTATAGAGGAAAGTAATGCTCTTGCCCTTGCCATCGTTCCCACTGAAAATGGCACTGCATCAACTTTTAACTCAGGTGCTGCTCAAACAAAAGATTTTGATCCAACTGGATGGGAGCTTGCCCTGGTCAGCACTCCAAGTACTGATATTTCTTCAGTCAATGAGAGACAATTGGCTGGTGGATTAGACTCGCTCACTCTTAACAGCTTATACGACGAGGGTGCATACAGAGCTGCACGACAACCGGTTTATGGAGTACCATCAGCCCCAAATCCATTTGAAGTGCAAGATCCATTTGCTGTATCCAGCAGCATCGCTCCACCAGCCGCCGTCCAAATGGCCGCAATGCAACAACAAGAAGCAAATCCATTTGGTCCTTACCACCAACCGTTTCACCCGCAGCAGCAACAGCAGCATATGTTGATGAACCCGGCAAATCCCTTTGCCGACGGAGGATTCGGGGCATTTCCTGCCAATTCCATTTCTCACCCACAGAACAACAACAACAATCCATTTGGAAGCACAGGCTTGTTGTGA 1704 0.4613 MGTLQSWRRAYGAIKDTTKVGLAHVNSDYADLDVAIVKATNHVECPPKERHLRKILFATSAIRPRADVAYCIHALSRRLAKTRNWTVALKTLIVIHRLLREGDPTFREELLNFSQRGRILQISNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIEAERLPKPAPGQEKGYSRTRDLDSEELLEQLPALQQLLYRLVGCRPEGAAVSNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALEAYKRAGQQALNLSDFYEVCKGLELARNFQFPVLREPPQSFLTTMEEYIKEAPRVVTVPSEPMLQLTYRPDEVLAIEDTKSPEEEETSVPIDNNVVVPNSEPAPPPPPTLPQNNFDTGDLLGLNDIAPNASAIEESNALALAIVPTENGTASTFNSGAAQTKDFDPTGWELALVSTPSTDISSVNERQLAGGLDSLTLNSLYDEGAYRAARQPVYGVPSAPNPFEVQDPFAVSSSIAPPAAVQMAAMQQQEANPFGPYHQPFHPQQQQQHMLMNPANPFADGGFGAFPANSISHPQNNNNNPFGSTGLL* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1122 567 Gene3D - 7 161 IPR008942 -
Lja4g1122 567 MobiDBLite consensus disorder prediction 337 375 - -
Lja4g1122 567 MobiDBLite consensus disorder prediction 548 567 - -
Lja4g1122 567 SMART enth_2 30 161 IPR013809 -
Lja4g1122 567 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 548 IPR045192 GO:0048268|GO:0072583
Lja4g1122 567 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Lja4g1122 567 Gene3D ANTH domain 173 323 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Lja4g1122 567 Pfam ANTH domain 31 309 IPR011417 GO:0005543
Lja4g1122 567 SUPERFAMILY ENTH/VHS domain 31 162 IPR008942 -
Lja4g1122 567 SUPERFAMILY GAT-like domain 178 309 - -
Lja4g1122 567 MobiDBLite consensus disorder prediction 542 567 - -
Lja4g1122 567 PANTHER OS05G0549000 PROTEIN 1 548 - -
Lja4g1122 567 CDD ANTH_N 32 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1122 Lja-Chr4 9873325 9881147 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1122 4 9873325 9881147 Lja4g1122 4 9873325 9881147 ECH