Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1115 ATGAAGAGAGAGCACGAGCAAGTGAGTGGGAAGAGCTGGATGGGAGGCGGCGGTGTTTGGGAGGAGGAAGACGAGCTTCTCGCGGTGGTGGGTTACAAGGTGAGGTCATCAGACATGGCGGAAGTTGCTCAGAAGCTTGAGCAACTAGAAGAAGCCATGTCCGATGACACCATCGCTCACCACCTCTCATCAGATACCATCCACTTCAACCCCGCCGACATCGGCACATGGCTTGAAACCATGCTCTCCAATTCCAATTTCGACCCCACTCCGGCAACCACCACCACCTCCGATTACGACGACCTCAAAGCCATTCCGGGAAGAGCAATCTACGCTCCTGATTCCCCTTCCTCCAGCAAACGCACCAAAACCTCCTCCTCTTCCTCCCCCTCCGCCGAGTCGTCAACTCGCTCCGTCGTGGTTGTGGATTCCCAGGAGAACGGGATCCGGCTCGTGCACTCACTCATGGCCTGCGCGGAGGCTGTCGACCGGAGCAACCTCGCCGTCGCGGAGGCGCTGGTGAAGCAGATCGGACACCTCGCCGCGTCGCAAGAAGGCGCGATGAGGAAGGTCGCTACCTATTTCGCCGAAGGCCTTGCGAGAAGAATCTACGGCGTTTACCCTCCTCAGCCGCAGCAGCAGCAGCATTTCTTCTCCGATTCGCTCCAGATCCATTTCTACGAGACTTGCCCTTACCTCAAATTCGCTCACTTCACCGCCAATCAAGCAATCCTCGAAGCGTTTCAGGGAAAGGATCGTGTTCACGTCATCGATTTCGCCATCAACCAAGGGATGCAGTGGCCGGCGTTGATGCAAGCCCTCGCGCTTCGCCCCGGTGGTCCTCCCGCGTTCCGACTCACCGGAATCGGACCTCCGGCACCAGACAACTCCGACCACCTCCAGCAGGTTGGGTGGAAGCTCGCTCAGCTGGCGGAAACCATCCACGTCCAGTTCGAGTATCGCGGCTTCGTCGCCAACAGCCTCGCCGATCTCGACGCCTCCATGCTCGATCTCCGTCCGCCGGAGGAAGAATCCGTGGCCGTCAACTCCGTCTTCGAGCTCCACAAGCTGCTCGCGCGCCCCGGCGCGCTCGAGAAGGTCTTCTCTGTCATCCGGCAAGTCCAGCCGGAGATTCTCACCGTCGTGGAGCAGGAAGCTGGCCACAACGGCGCTAGTTTCCTAGACCGGTTCACTGAGTCGCTCCACTACTACTCAGCCCTCTTCGACTCGCTCGAAGGCTCCTCCGCCGTCGAGTCGCAGGACAAGGCCATGACGGAGATCTACCTGGGGAAGCAAATCTGCAACGTGGTGGCGTGCGAGGGTTCCGACCGGATCGAACGGCACGAGACACTGACTCAGTGGCGAACCCGGTTCAACTCGGCCGGACTCTCTCCGGTTCACCTCGGGTCCAACGCGTTCAAGCAAGCTAGCATGTTGTTGGCGCTTTTCGCCGGCGGCGACGGTTACAGAGTGGAGGAGAATAATGGGTGTCTTACTCTTGGTTGGCACACTAGGCCATTGATTGCCACCTCTGCGTGGCAACTCGCTTCTAATTCGGTGGCGACTCACTGA 1572 0.5929 MKREHEQVSGKSWMGGGGVWEEEDELLAVVGYKVRSSDMAEVAQKLEQLEEAMSDDTIAHHLSSDTIHFNPADIGTWLETMLSNSNFDPTPATTTTSDYDDLKAIPGRAIYAPDSPSSSKRTKTSSSSSPSAESSTRSVVVVDSQENGIRLVHSLMACAEAVDRSNLAVAEALVKQIGHLAASQEGAMRKVATYFAEGLARRIYGVYPPQPQQQQHFFSDSLQIHFYETCPYLKFAHFTANQAILEAFQGKDRVHVIDFAINQGMQWPALMQALALRPGGPPAFRLTGIGPPAPDNSDHLQQVGWKLAQLAETIHVQFEYRGFVANSLADLDASMLDLRPPEEESVAVNSVFELHKLLARPGALEKVFSVIRQVQPEILTVVEQEAGHNGASFLDRFTESLHYYSALFDSLEGSSAVESQDKAMTEIYLGKQICNVVACEGSDRIERHETLTQWRTRFNSAGLSPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLTLGWHTRPLIATSAWQLASNSVATH* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1115 523 PANTHER DELLA PROTEIN GAI1-RELATED 22 119 IPR030006 GO:0003712|GO:0005634
Lja4g1115 523 Coils Coil 39 59 - -
Lja4g1115 523 ProSiteProfiles GRAS family profile. 142 514 IPR005202 -
Lja4g1115 523 SMART DELLA_2 24 95 - -
Lja4g1115 523 Pfam Transcriptional regulator DELLA protein N terminal 24 87 IPR021914 -
Lja4g1115 523 MobiDBLite consensus disorder prediction 115 139 - -
Lja4g1115 523 Pfam GRAS domain family 151 514 IPR005202 -
Lja4g1115 523 Gene3D - 22 84 IPR038088 -
Lja4g1115 523 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 22 119 IPR005202 -
Lja4g1115 523 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 139 515 IPR005202 -
Lja4g1115 523 MobiDBLite consensus disorder prediction 110 139 - -
Lja4g1115 523 PANTHER DELLA PROTEIN GAI1-RELATED 139 515 IPR030006 GO:0003712|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1115 Lja-Chr4 9832316 9834801 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1115 1 517 GRAS Transcription Factor Family AT2G01570 61.993 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja4g1115 GRAS 2.4e-137 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1115 4 9832316 9834801 Lja4g1115 4 9832316 9834801 ECH