Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0928 ATGGCTCAGGTACAAAGTGGCCAAGACAGTGAAGGGATTAAGCTGTTTGGCACAACAATCACGTTGCATGGAGGTAGAGAAACTAGAGAAAGAAGTGAAGACAAAAAGGGAAGTGGAGAAGAGAGAGATCAGGAGAAAAAGCCTGATAAAATCATACCATGCCCTAGATGCAAGAGCATGGAGACCAAGTTTTGCTACTTCAACAACTACAACGTTAATCAGCCAAGGCATTTCTGCAAGGGCTGCCAGAGGTACTGGACGGCCGGCGGGGCCCTCCGCAACGTGCCCGTAGGGGCCGGCCGGAGAAAGATGAGGCCGTCGTGCGACGAGTTGCTGGACGGTGGTGGTAGCATATGTGATGCATCTGCCACCGTCGAGCAGCTAGGTTTGGGGACTCATCGTGAATGGCACGAGGCTGCCGCCATGTTTCATGGTGATTTCCGACAACTTTTTCCATCTAAAAGGCCGAGAACCACCGCGGGTTGTCATATCAAGATCATCCAGGAAGTTACATTAACATCAGAAATCAGATACAAACAAATTAAAGGAGGCTCTTGA 558 0.4982 MAQVQSGQDSEGIKLFGTTITLHGGRETRERSEDKKGSGEERDQEKKPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKMRPSCDELLDGGGSICDASATVEQLGLGTHREWHEAAAMFHGDFRQLFPSKRPRTTAGCHIKIIQEVTLTSEIRYKQIKGGS* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0928 185 MobiDBLite consensus disorder prediction 24 50 - -
Lja4g0928 185 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 5 162 - -
Lja4g0928 185 MobiDBLite consensus disorder prediction 1 15 - -
Lja4g0928 185 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
Lja4g0928 185 Pfam Dof domain, zinc finger 50 105 IPR003851 GO:0003677|GO:0006355
Lja4g0928 185 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
Lja4g0928 185 MobiDBLite consensus disorder prediction 1 50 - -
Lja4g0928 185 PANTHER CYCLIC DOF FACTOR 2 5 162 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0928 Lja-Chr4 7909621 7910864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0928 8 157 C2C2-Dof Transcription Factor Family AT2G34140 55.556 1.92e-53 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja4g0928 zf-Dof 1.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0928 - - gmx:100527802 210.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0928 4 7909621 7910864 Lja4g0928 4 7909621 7910864 ECH