Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0354 ATGGTGAAACATGACTTGAGAAAGTCTATAAAGTCGTTCTTTGGCAGTCACATTGACCCTGATAAAGAAGAGCAGCTCCAGGAAGCTAAAACAGATATTGAAGACAAAGTGAAAAAGATATTGAAACTTGTTAAAGATGACAATGTTGAGGAGGATAAGGAACCACTTGTTGAATTGATTGAGGATTTCCACAATCAATACCAATCACTATATGCAAGATATGATCATCTAACAGGCGAGTTAAAAAAGAGGATAAAGGGAAAGCGAGAAAGTGGAAGCTCTTCATCCAGTTCTGACTCAGATTCAGATTCTTCAAAAGACAAAGACAGCAAAAACGGACTACCGGAAAATGACTTTCAAAAGATAATTGATGGTGTAAAACAAGAACTTGAAATGGCGCGTGCGGAAGTTGCTGAAATAAACCAGAAGTTGATTGTTACACATGAAGAGAAGGAGGATCTAAATTCAAAATATGTAGCAGCACTAAGCAAGATACAAGAAGCAGACAAAATTAACATGGATTTGAAAACTGATGCTGAAGCATTAGGCATTCAAACATCAAAACTTTTGGATGAGAATGCTGAACTAAAGAAGCAACTGGACATTGCTGGCAAAGTAGAAGCAGAACTGAGTCAAAGCTTGGAAGATTTGAAGATAGAAAAAGGGAGTTTGACCATGGAGAAAGAGACAGCTACCCAACAAATTGACGAGGAAAAGAAGATTACAGATAGCCTGAGGATTCTAATTGATCAACTGAAAGATGATAAATTAGAGCTTGGGAAAGAATTTCAAGCAGTTACAGATGAACTTTCTGTTGTGAAGCAGCATTTGGAAAATGCAGAACAGAAAATAGCAAATGTAAGCCACAATCTGAAAATCACTGAGGAAGAAAATGAATCATTAAAAGTGAAACTTTCACAGGCTTCAGATGAGGTTCAGCTGGCTCACAAAAAAATACAAGAATCTGAAGCTGAATTATGTCAGTTAAAAGAGAAACATGATGTGAGAGAAAGGGAAGTGTCAACCCTCACTAATGAATCCTCAGATCAAATCAGGGAGCTCCAGGGTAAACTTAATAAGGCAGAGGAAGAAGGTTCAGCTCAACTAATGGCTTTAAGTGAGCAAATTAGTAATCTTCAACATGATTTGGTTTCCCTGCAGAATGAGAAACAGGAATTAACAGAGCAGTGTGAAAAGCTGAAGTTGGAGCTGGATTCCATACACAGCAAGAAAAGTGAAGCTGAAGAGCTAATAAGGGCTAACGACAATGAGATTAGTCATCTGACACAGGAGAATTTGGAGCTAAATGACAAAATAGCACAATTGGAGCAAAGGTCAGCAGAAAGAGAATCTGAGTTCTCTGCTCTCCAGGATAAACTTAAAAAGGCAGAGGAAGAAGGTTCAGCTCAACTAATGGCCTTAAGTGAGCAAATTAGTAATCTTCAACATGATTTGGTTTCCCTGCAGATTGAGAAACAGGAATTAACAGAGCAGTGTGAGAAGCTGAAGTTGGAGCTGGATTCCCTACACAGCAAGAAAAGCGAAGCTGAAGAGCTACTAAGGGCTAACGGTGATGAGATTAGTCATCTGACACAGGAGAAGTTGGAGCTAAATGACAAAATAGCACAATTGGAGCAAAGATCAGCAGAAAGAGAATCTGAGTTCTCTGCTCTCCAGGATAAACTTAAAAAGGCAGAGGAAGAAGGTTCAGCTCAACTGATGGCCTTAAGTGAGCAAATTAGTAATCTTCAACATGATTTGGTTTCCCTGCAGAATGAGAAACAGGAGTTAACAGAGCAGTGTGAAAAGGTGAAGTTGGAGCTGGATTCCATACACAGCAAGAAAAGCGAAGCTGAAGAGCTACTAAGGGCTAATGGCGATGAGATTAGTCATCTGACACAGGAGAAGTTGGAGCTAAATGACAAAATAGCACAATTGGAGCAAAGATCAGCAGAAAGAGAATTTGAGTTCTCTGCTCTCCAGGGCAAGCTTAATAAGGCAGAGGAAGAAGGTTCAGCCCAACTAATGGCCTTCAGTGAGCAAATTAATAACCTTCAACATGATTTGGTTTCCCTGCAGAATGAGAAACAAGAATTAACAGAGCAGTGTGAAAAGCTAAATTTGGAGCTGGATTCCATACACAGCCAGAAGAGTGGAGTTGAAGAGCAAATAAGAGTTAAAGACCATGAGAACAGTGATCTGAGAGAGGAAAATTTGGGATTTCGGGAAACAATTACTGCACTGGAGAAAACACTAGCAGAGAAAGAGGCAGAGTTGTCCACTCTACAGGAAAGGCTTCTTGAAAAGGAGAATGAGGCTTCAGGGCAAGTAATTGCCTTCACCAACCAAGTTAATAGCCTGCAGTCAGACTTGCTTTCCTTGCAGAAGACGAAAGAGGAATTGGAGCTCCACTGTGAAAAAATCAGAGAAGAACATACTGAAAGCCTCGTGGTGGTAGAGAGAGAAAAGAATGACTTAGCAAGCAAAACTGTGGATCATCAGAGAGTATTGGATGAACGAGAAGATGCATATCAGAAGTTGAATGAAGAATATAAACAAATTGATAGTTGGTTGAAAGAATGCCAACTCAAACTTGAAGTTGCAGAGAAAAAGATTGAAGATATGACAGAAGAGTTTCATCAAGGCATTGGGTTGAAAGATCAGATGGTAGCTGATTTGGAGCATACAATAGAAGACCTGAAAAGAGACCTAGAAGACAAAGGAGATGAAATCAGCTCTTTGTTTGAGAATGTCCGCATGATAGAGGTTAAGCTTCGTCTGTCAAACCAGAAGCTCCGGGTCACAGAACAATTGCTAAGTGAGAAGGAAGAGAGCTTTAGAAAAGCGGAAGAGAAGTTTCAGCAAGATCAGAGAGCACTTGAAGACAGGATTGCTATTTTGTCAGCAACAATTCATGCTAACAATAAAGCTTTTCATGAAACTGTCACAGATGTTAAAGAGTATTTACACAGTTTGATAACTGGCATAGATACTTTAAGCTTTAAGCTTTCTGACAATTGTAAAGATTATGAAAATTGCATCTCAAACATTTCACATGAGCTTCAGGTTACAAAAGACCGTGTTTTGGAGATGAATAAGGAAAAAGAGCAGTTAAAGGAGGACAAAAAGCGTTTGTTGGAGGAGCTGCGGGGTGAAAAAGAAAAGGAGCTGACTCTGAGGGCGGTGGTTGAGAAGCTAGAATCAAAGGCAAGCAAGGAGGAAGCAGAGAAGGTGAATCTGACAACAACTGTTGTTCAACTTAATAAGACAGTTGGAGAGCTACAGAAAATGATGAAAGAGAAAGAAGATGGTATGTTGGATTTGGGGGAGGAAAAGAGGGAGGCCATCAGGCAGCTGTGTTTGTGGATTGATTATCACCGTGGTCGTTACGACTATCTGAAGGACATTATATCGAAGACTCGCAGTGGCCAGAGAGCAGCATAA 3444 0.3995 MVKHDLRKSIKSFFGSHIDPDKEEQLQEAKTDIEDKVKKILKLVKDDNVEEDKEPLVELIEDFHNQYQSLYARYDHLTGELKKRIKGKRESGSSSSSSDSDSDSSKDKDSKNGLPENDFQKIIDGVKQELEMARAEVAEINQKLIVTHEEKEDLNSKYVAALSKIQEADKINMDLKTDAEALGIQTSKLLDENAELKKQLDIAGKVEAELSQSLEDLKIEKGSLTMEKETATQQIDEEKKITDSLRILIDQLKDDKLELGKEFQAVTDELSVVKQHLENAEQKIANVSHNLKITEEENESLKVKLSQASDEVQLAHKKIQESEAELCQLKEKHDVREREVSTLTNESSDQIRELQGKLNKAEEEGSAQLMALSEQISNLQHDLVSLQNEKQELTEQCEKLKLELDSIHSKKSEAEELIRANDNEISHLTQENLELNDKIAQLEQRSAERESEFSALQDKLKKAEEEGSAQLMALSEQISNLQHDLVSLQIEKQELTEQCEKLKLELDSLHSKKSEAEELLRANGDEISHLTQEKLELNDKIAQLEQRSAERESEFSALQDKLKKAEEEGSAQLMALSEQISNLQHDLVSLQNEKQELTEQCEKVKLELDSIHSKKSEAEELLRANGDEISHLTQEKLELNDKIAQLEQRSAEREFEFSALQGKLNKAEEEGSAQLMAFSEQINNLQHDLVSLQNEKQELTEQCEKLNLELDSIHSQKSGVEEQIRVKDHENSDLREENLGFRETITALEKTLAEKEAELSTLQERLLEKENEASGQVIAFTNQVNSLQSDLLSLQKTKEELELHCEKIREEHTESLVVVEREKNDLASKTVDHQRVLDEREDAYQKLNEEYKQIDSWLKECQLKLEVAEKKIEDMTEEFHQGIGLKDQMVADLEHTIEDLKRDLEDKGDEISSLFENVRMIEVKLRLSNQKLRVTEQLLSEKEESFRKAEEKFQQDQRALEDRIAILSATIHANNKAFHETVTDVKEYLHSLITGIDTLSFKLSDNCKDYENCISNISHELQVTKDRVLEMNKEKEQLKEDKKRLLEELRGEKEKELTLRAVVEKLESKASKEEAEKVNLTTTVVQLNKTVGELQKMMKEKEDGMLDLGEEKREAIRQLCLWIDYHRGRYDYLKDIISKTRSGQRAA* 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0354 1147 Coils Coil 249 325 - -
Lja4g0354 1147 MobiDBLite consensus disorder prediction 101 115 - -
Lja4g0354 1147 Pfam KIP1-like protein 14 75 IPR011684 GO:0003779
Lja4g0354 1147 Coils Coil 890 917 - -
Lja4g0354 1147 MobiDBLite consensus disorder prediction 338 358 - -
Lja4g0354 1147 Coils Coil 675 723 - -
Lja4g0354 1147 Gene3D - 366 473 - -
Lja4g0354 1147 Coils Coil 932 959 - -
Lja4g0354 1147 Coils Coil 745 772 - -
Lja4g0354 1147 Coils Coil 214 234 - -
Lja4g0354 1147 Coils Coil 1063 1083 - -
Lja4g0354 1147 PANTHER COP1-INTERACTIVE PROTEIN 1 1 355 - -
Lja4g0354 1147 Coils Coil 858 878 - -
Lja4g0354 1147 Coils Coil 784 814 - -
Lja4g0354 1147 Coils Coil 629 649 - -
Lja4g0354 1147 MobiDBLite consensus disorder prediction 84 118 - -
Lja4g0354 1147 PANTHER COP1-INTERACTIVE PROTEIN 1 491 607 - -
Lja4g0354 1147 PANTHER COP1-INTERACTIVE PROTEIN 1 597 705 - -
Lja4g0354 1147 PANTHER COP1-INTERACTIVE PROTEIN 1 393 502 - -
Lja4g0354 1147 PANTHER COP1-INTERACTIVE PROTEIN 1 695 1146 - -
Lja4g0354 1147 PANTHER COP1-INTERACTIVE PROTEIN 1 346 403 - -
Lja4g0354 1147 Coils Coil 527 568 - -
Lja4g0354 1147 Coils Coil 123 143 - -
Lja4g0354 1147 Coils Coil 471 519 - -
Lja4g0354 1147 PANTHER COP1-INTERACTIVE PROTEIN 1 1 355 - -
Lja4g0354 1147 PANTHER COP1-INTERACTIVE PROTEIN 1 491 607 - -
Lja4g0354 1147 PANTHER COP1-INTERACTIVE PROTEIN 1 597 705 - -
Lja4g0354 1147 PANTHER COP1-INTERACTIVE PROTEIN 1 393 502 - -
Lja4g0354 1147 PANTHER COP1-INTERACTIVE PROTEIN 1 695 1146 - -
Lja4g0354 1147 PANTHER COP1-INTERACTIVE PROTEIN 1 346 403 - -
Lja4g0354 1147 SUPERFAMILY Tropomyosin 223 439 - -
Lja4g0354 1147 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 10 81 IPR011684 GO:0003779
Lja4g0354 1147 Coils Coil 573 614 - -
Lja4g0354 1147 Coils Coil 1021 1059 - -
Lja4g0354 1147 Coils Coil 344 364 - -
Lja4g0354 1147 Coils Coil 369 466 - -
Lja4g0354 1147 Gene3D - 814 987 - -
Lja4g0354 1147 Gene3D - 484 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0354 Lja-Chr4 2825433 2831581 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0354 4 2825433 2831581 Lja4g0354 4 2825433 2831581 ECH
Lja4g3503 4 65904513 65906591 Lja4g0354 4 2825433 2831581 PCT