Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0344 ATGGAAGGAGTGCAAGAAAGAAACACAGAGGTTGAACTCCATGATGGTGTTAACATTGGATCATGTTTATCAAATCTCATACTATCAAGCGGAACAAACACCCTCGACTCGATTTTCTCTCATTGCGAGCCACGGCCACCAAACGCAACTACCATCACTAAGTTGGGACCTATAACCTCTTTGGGATCCTCAGTGTACCATCGCCAAAGAGATATTCTGCAAAAATTCTACGAAGAAACTCGGTTGAACCGGTCCTCTGTTTCCTCTGCTTCCCCTGTTTTCTCTGTTTTCAGTTCCTGGAAGAAAACATACCGGGGAGTGAGACAGAGGCACTGGGGAAAATGGGTCGCTGAGATTAGACTCCCTCAGAATAGGATGAGGGTGTGGTTGGGAACCTATGATACTCCTGAAGCTGCTGCTTATGCTTATGATTGTGCTGCTTACAAGCTCCGAGGCGAATACGCGCGTTTGAATTTCCAAGACATGATGATGAACCCAACAAACTTAGATTCTGAGAGATTGAATGCTTTGAAAGTTTCCGTGGATGCTAAAATTCAAGCCATATGTGAAAAGATGAAGAAGAGGGACAAGCCCAAGAACAAGAAGCGTGCTTCCAAGAAAGTGAACAGTGAGAATCAGAAGAAGATAAAGTCATTGCCTTGTTGTTCTCCATCTTCGTTGCTCTGTTCTGGTGTTTCAGGGGATGGAATTTGCAATGCTACATGCTCTGTTTCAGAGGAGTGTCCAATAATGGTAATAGAGGATCACTCGGATTTTCAGGATTGTTCATTGGAAAGGGTACCGTCTTTTGATCCTGAGTTGATTTGGGAGGTTTTGACTAATTAA 846 0.4374 MEGVQERNTEVELHDGVNIGSCLSNLILSSGTNTLDSIFSHCEPRPPNATTITKLGPITSLGSSVYHRQRDILQKFYEETRLNRSSVSSASPVFSVFSSWKKTYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTPEAAAYAYDCAAYKLRGEYARLNFQDMMMNPTNLDSERLNALKVSVDAKIQAICEKMKKRDKPKNKKRASKKVNSENQKKIKSLPCCSPSSLLCSGVSGDGICNATCSVSEECPIMVIEDHSDFQDCSLERVPSFDPELIWEVLTN* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0344 281 CDD AP2 104 161 IPR001471 GO:0003700|GO:0006355
Lja4g0344 281 ProSiteProfiles AP2/ERF domain profile. 103 160 IPR001471 GO:0003700|GO:0006355
Lja4g0344 281 SUPERFAMILY DNA-binding domain 103 161 IPR016177 GO:0003677
Lja4g0344 281 SMART rav1_2 103 166 IPR001471 GO:0003700|GO:0006355
Lja4g0344 281 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
Lja4g0344 281 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 281 - -
Lja4g0344 281 Gene3D AP2/ERF domain 102 161 IPR036955 GO:0003700|GO:0006355
Lja4g0344 281 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Lja4g0344 281 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
Lja4g0344 281 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0344 Lja-Chr4 2761799 2762644 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0344 19 281 AP2-EREBP Transcription Factor Family AT1G64380 42.470 7.88e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja4g0344 AP2 5.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0344 - - lang:109331119 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0344 4 2761799 2762644 Lja4g0344 4 2761799 2762644 ECH