Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0149 ATGAGGAACCATTTGCAGTTTCTTTGGCGTCACATCTTGGTTTTCTTACTTCTTAGTGTCTCATATCAAGTTGAAGCAAAATCAACTATTGAACCATGTAGCTCAGGATTCCCTTGCCCCTCTCTTCTCTCTTATATCTTGCCTTGGGACTCCAAGCTCTCAGAAATTGCAACACGCTTCAGTGTAAATGTATCAAACATCTTGGCTGCAAACTCTGTTTTTCCCATAACACCATCAAGTGGCCATCAAATCCTTTCTGCAAAATCAATAGTCAAGATACCCTTTTCATGTCCTTGTGTGGATGGCATAAGGAGGTCCATTTCAACCATTTACAATGTTGAGGCAAGTGACACACTCGCCTCCATTTCTGAAGGTTATGGTGGATTAGTTAGTGCTGAACAGATTAAGACCATGAACAGCATCAATGAGACAAACCCTTTGACATATGGAAGCAGCATTGTTATACCACTTCCTTGCAAGTGTTTGAACAATGTTAACAATGGAGACACCACTGTTTACATGTCTTATGTGGTGCAGAAAGGGCAAAGCTTGGGAAGCATAGCAACAATGTATGGTACTACAGTTTCAGACTTGGAAAGTGTAAATGGACTTGGGCAAAATGCAGTTGATCCAGGAGACATACTATCTGTTCCTGTTGCAGCATGTTCATCAGCAACCCTAAATTGGTACAGTGAGAATCTTATAGTCCCAAATGGCTCATATATTTTAACTGCAAGCAACTGCATCCAATGTACTTGTACACCAAGGGATCTCAAGATGGAATGTCTTCCTTCTGGAATGGATGTCCCCTGCTATAATTTGCATTGCAAAGGATCCAATCTTATTATTGGAAATGAATATGTGGAACATTCACAAACCAGTTGCAATGTGAGCCAGTGTGTTTACCGTGGACATAGAGGTGGCAAAATTCTGAGTAGCATCATAAACTCTTCTTACCTCCAGTGCCCTGATAATCAAAGTTATAGTGGACCATCACGTTGGCCTTCCTTAACACCATATGCTGCAGAGTACCCATTTGATATATCTCCAAGCCCATCATCACCACCATTGCCAGTTTCTGAGGCTGCTCTGAGGACACGTGCCTCTGGTGGATGGCAGGGACAATCTTTAATCAATGTGATGCAGTTGTTTTTGATAAAACTTATCCTTTATTTTATCATGTGA 1185 0.4127 MRNHLQFLWRHILVFLLLSVSYQVEAKSTIEPCSSGFPCPSLLSYILPWDSKLSEIATRFSVNVSNILAANSVFPITPSSGHQILSAKSIVKIPFSCPCVDGIRRSISTIYNVEASDTLASISEGYGGLVSAEQIKTMNSINETNPLTYGSSIVIPLPCKCLNNVNNGDTTVYMSYVVQKGQSLGSIATMYGTTVSDLESVNGLGQNAVDPGDILSVPVAACSSATLNWYSENLIVPNGSYILTASNCIQCTCTPRDLKMECLPSGMDVPCYNLHCKGSNLIIGNEYVEHSQTSCNVSQCVYRGHRGGKILSSIINSSYLQCPDNQSYSGPSRWPSLTPYAAEYPFDISPSPSSPPLPVSEAALRTRASGGWQGQSLINVMQLFLIKLILYFIM* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0149 394 SMART LysM_2 110 156 IPR018392 -
Lja4g0149 394 SMART LysM_2 175 218 IPR018392 -
Lja4g0149 394 Gene3D LysM domain 104 166 IPR036779 -
Lja4g0149 394 Gene3D LysM domain 167 227 IPR036779 -
Lja4g0149 394 SUPERFAMILY LysM domain 174 218 IPR036779 -
Lja4g0149 394 Pfam LysM domain 111 156 IPR018392 -
Lja4g0149 394 Pfam LysM domain 176 218 IPR018392 -
Lja4g0149 394 Pfam LysM domain 53 72 IPR018392 -
Lja4g0149 394 CDD LysM 175 217 IPR018392 -
Lja4g0149 394 ProSiteProfiles LysM domain profile. 109 155 IPR018392 -
Lja4g0149 394 CDD LysM 109 155 IPR018392 -
Lja4g0149 394 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 1 12 363 - -
Lja4g0149 394 ProSiteProfiles LysM domain profile. 174 217 IPR018392 -
Lja4g0149 394 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 12 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0149 Lja-Chr4 1122048 1124517 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0149 12 353 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 43.642 4.49e-87 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0149 - - gmx:100819382 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0149 4 1122048 1124517 Lja4g0149 4 1122048 1124517 ECH