Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0128 ATGGTTATCCATTTCCCCTTCATCACATCCATACTCACTATAGTTTTCTTCTTCTTAACAACTTTGCCACACTCCTACTCCCAGAAAAATGACACTTTCTCCATTTGCAGCCAACCATTCAGCTGTGGAACACTCAACATATCATATCCTTTCTGGGGAGATAACAGACCCAGTTTTTGTGGCAGTGAAGGATTCAATCTCACCTGCATGCAAAGCCAGAACACTTCTTCTATTCAAATTGGTTCACAAAAGTTCCAAGTACTGAACATTAACCAAACTGCTTCAACATTGAGAATAGTGAGAACAGACCTTGTCTATGATAACTGTTCTTCAAATTTCACCAACACTTCTCTGCATTCAAGTCCCTTTAGTTTTCTCCCCACTGTTCAGAATGTGACTATATTCTACGAGTGCCCATTTGGGATTTCAGAGAACAACACTTTTACATGCCAGAATGATAGCAGTAAACATGGTTTTTATGTGGTGAATAATGGAACTCAGATGCAGCAGTTTCAAAGGTGCAGGGTCAGAGTTCAAGTGCAAGTTTCCCAGGATGTTGTTTGGGACTCTGAAGGTGGAATTGGGGCACTTAGAAAAGCTTTAAGTCAAGGTTTTGATGTGGAGTATGATGCAGGGTGGTCTTCTCAGTGCACAGCATGCAGAGAATCTGGAGGAGCATGTGGGACTAATGAGAATAATTCATCTCAGTTTTCATGTTATTGCTCAGGTGGAACTCATGAATCAGCATGTCCTAGTCACAAAAGTCGAACCAAGAGTAAATTGGTATTGAAACTGGTTTTAGGTTTTGTTGCTAGTGGATTTGGTCTACCTCTTATTGCTGTCATCATATGCCGTAATAAAGCTAAAATTTGGAAGTTTATATCTACAAAACTAGGCTTGAGAAAAAGGGATGATCGCGCTATAGAAGCATTCCTTGAAAGCCAAGGTCCTCTGAATCTAAAAAGATACAGTTTCTCAGATATCAAGAAAATGACTGATTCCTTCAAGGTTAAACTGGGTGAAGGAGGTTATGGTTCTGTATACAAAGGAAAATTACCTGGTGATGGTTGCTCTGTGGCGGTGAAGGTGCTGAATGAGTCAAAAGGGAATGTAGAAGATTTTATCAATGAGGTAGCCAGCATCAGCAAAACATCCCATGTTAATGTTGTGACTCTTCTTGGATTTTGTCTAGAAGGAAGCGGAAAAGCTCTCGTCTATGAGTTCATGTCCAATGGCTCCCTGGAAAAGTACATTCACAAGAATCACAACAAAGCAACTGAAACTGAAAATAAAACCTTGAGCTGGGAGAATTTGTACCAGATTGCAATTGGTATAGCTCGAGGACTCGAGTACTTGCATCAAGGATGCAACACTCGGATTCTGCATTTTGACATCAAACCACACAACATCCTTTTAGATGAAACTTACCGGCCGAAGATATCAGATTTTGGGCTCGCAATGACAGGAACAAGGGATGAGAGCGTGATTTCAATGTCAAACGCGAGAGGGACACTGGGGTACGTGGCGCCTGAAGTGTTCAACAAAAGCTTCGGAGGCGTTTCCCACAAGTCTGATGTCTACAGCTATGGAATGATGCTGCTAGAGATGGTTGGAGGGCAGAAGAGCATAAATGTCGAAGCTAGCGGCTCGAGCGAGATATATTTTCCTCATTTGGTGATTTATAAGAAGATTGAGCTGGGCAATGATTTGGGAATTGATGGGGTATTGTCCACAGAGGAAAATGAGATAGCCAAGAGATTGACTAAGGTGGGTTTGTGGTGCATTCAGACATTTCCTTCTCACAGACCTACTATCAGTAAGGTGATAGACATGTTGGAAGGTAGCATGGATTCATTGGAAATGCCACCAAAACCTGTCATGTCTTCTCCTCCAAGATCAACAACAACAACAGATCAATTTTCCACTGCATCAATATCACTGGAAAGTGGTAGTGTGAATGAAAGTATGGCTATGAGTATGAATTCTTACATGAGATGA 1998 0.4139 MVIHFPFITSILTIVFFFLTTLPHSYSQKNDTFSICSQPFSCGTLNISYPFWGDNRPSFCGSEGFNLTCMQSQNTSSIQIGSQKFQVLNINQTASTLRIVRTDLVYDNCSSNFTNTSLHSSPFSFLPTVQNVTIFYECPFGISENNTFTCQNDSSKHGFYVVNNGTQMQQFQRCRVRVQVQVSQDVVWDSEGGIGALRKALSQGFDVEYDAGWSSQCTACRESGGACGTNENNSSQFSCYCSGGTHESACPSHKSRTKSKLVLKLVLGFVASGFGLPLIAVIICRNKAKIWKFISTKLGLRKRDDRAIEAFLESQGPLNLKRYSFSDIKKMTDSFKVKLGEGGYGSVYKGKLPGDGCSVAVKVLNESKGNVEDFINEVASISKTSHVNVVTLLGFCLEGSGKALVYEFMSNGSLEKYIHKNHNKATETENKTLSWENLYQIAIGIARGLEYLHQGCNTRILHFDIKPHNILLDETYRPKISDFGLAMTGTRDESVISMSNARGTLGYVAPEVFNKSFGGVSHKSDVYSYGMMLLEMVGGQKSINVEASGSSEIYFPHLVIYKKIELGNDLGIDGVLSTEENEIAKRLTKVGLWCIQTFPSHRPTISKVIDMLEGSMDSLEMPPKPVMSSPPRSTTTTDQFSTASISLESGSVNESMAMSMNSYMR* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0128 665 MobiDBLite consensus disorder prediction 619 645 - -
Lja4g0128 665 MobiDBLite consensus disorder prediction 630 645 - -
Lja4g0128 665 Pfam Protein kinase domain 336 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0128 665 SUPERFAMILY Protein kinase-like (PK-like) 320 642 IPR011009 -
Lja4g0128 665 Pfam Wall-associated receptor kinase galacturonan-binding 36 101 IPR025287 GO:0030247
Lja4g0128 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Lja4g0128 665 Gene3D Transferase(Phosphotransferase) domain 1 409 622 - -
Lja4g0128 665 SMART serkin_6 333 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0128 665 PANTHER RUST RESISTANCE KINASE LR10-RELATED 6 649 IPR045874 GO:0004672
Lja4g0128 665 Gene3D Phosphorylase Kinase; domain 1 297 408 - -
Lja4g0128 665 ProSiteProfiles Protein kinase domain profile. 333 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0128 665 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 6 649 - -
Lja4g0128 665 CDD STKc_IRAK 339 614 - -
Lja4g0128 665 ProSitePatterns Protein kinases ATP-binding region signature. 339 362 IPR017441 GO:0005524
Lja4g0128 665 Pfam Wall-associated receptor kinase C-terminal 150 243 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0128 Lja-Chr4 986982 991243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0128 10 625 Receptor kinase-like Gene Family AT5G38260 40.000 6.85e-139 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja4g0128 Pkinase 1.6e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0128 4 986982 991243 Lja4g0128 4 986982 991243 ECH