Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0126 ATGGACAAGCTCTTATTCAACTGTTACATTGGATACTTCCTTCTTTTCCATTCTCTTTTGGTTGTGCATGGCATAGATCAATTATCATGCAATCAAACCCCATACCCTCAAGTGTGCAAGCATTACACTAGCACCATGACCAACACATTATCAACTACCCAAGATGCTTCATCATCTTCTTCTTATTCCTTCCATGACATGGCCCTTAAGGTCACCATGGATCAAGCCATTGAAGCCCACAAACATGTCTCCACCATGGAATTAAATAATTACTTCAATGACAAGCAAGCCAAGTCAGCATGGGAGGATTGTTTGGAGCTCTATGAGGACACAATTCATCAACTCAATCGTTCAATGAGCACAAACAATCTAAATGACAAGTTAACTTGGCAAAGTGCTTCCATGAACAACCATCAAACATGCCAAAATGGTTTCATTGACTTCAACCTTGACTCTCACTTGAACCACTTCCCATCCATGCTAAGCAACTTCTCGAAGTTGCTCAGCAATTCCTTGTCCATAACCAAGGCTATGACATTATCATCAGTATCAGCATCATTGTCCACCAATTCCAAACAAATCGGTGGGCGAAGGTTGCTTTCAGCAACACTGAGCCAAAAGAACAAGATACCAAGAGACCAGGATCACGGCTTCCCCGTCTGGTTGTCTTCTTCAGATAGAAAGCTTCTTCAGGTGCCGAGGGAGGAAGCAAAAGCTGATGTTGTGGTGGCACAGGATGGGAGCGGGAACTGTAAAACTATCTCTGAGGGTGTGGCTGCAGCTGCTAAGCTTAGTGGTAAAGGGCGAGTTGTAATTCATGTCAAAGCAGGAGTTTACAAAGAAAGTGTTAACATCCCAAGGACAGTGAGGAACTTGATGATCATTGGAGATGGGATGGGTGCCACTGTTGTTACTGGTAGTAATAACGTACAAGATGGCTCCACCACTTTTCGTTCAGCTACTTTTGCGGTGATGGGTGATGGGTTCATTGCCCGTGACATGACCTTCGAGAACACGGCAGGACCACAGAAGCACCAGGCGGTGGCTCTCCGCTCCGGCGCCGACCACTCCGTGTTCTATCGCTGCGGCTTCAAGGGCTACCAGGACACCTTATACGTCTACTCCCAACGCCAATTCTACCGTGACTGTGACATCTACGGCACCATAGACTTCATCTTCGGCGACTCCGTTACGGTGCTTCAGAACTGTAACATCTTCGTGAGGAAACCCATGAGCAACCAGCAGAACACCGTGACGGCGCATGGAAGAACTGACCCCAACGAGAACACCGGTATCATCATCCACAACTGCCGTGTCACCGCAGCAGGGGATTTGAAACCTGTGCAGGGCTCTGTTGAGACTTACCTAGGAAGGCCATGGCAGAAGTATTCGAGGACGGTGGTGATGAAGAGTAATATTGATGCGTTAGTTAGCCCTGCAGGTTGGGCTCCTTGGGCTGGAAGCTTTGCCTTGAGCACACTCTATTATGGTGAGTACATGAATGTTGGAGCTGGTGCCAGTACAGGGGGGAGGGTGAAGTGGGCTGGGTTTCATGCCATCACTAATCCTGCTGAGGCTGGGAAGTTCTCTGTTGGGAATTTCTTGGCTGGAGACTCTTGGATTCCTGGTAGTGGAGTGCCCTTTGATGCAGGTTTGTAA 1659 0.478 MDKLLFNCYIGYFLLFHSLLVVHGIDQLSCNQTPYPQVCKHYTSTMTNTLSTTQDASSSSSYSFHDMALKVTMDQAIEAHKHVSTMELNNYFNDKQAKSAWEDCLELYEDTIHQLNRSMSTNNLNDKLTWQSASMNNHQTCQNGFIDFNLDSHLNHFPSMLSNFSKLLSNSLSITKAMTLSSVSASLSTNSKQIGGRRLLSATLSQKNKIPRDQDHGFPVWLSSSDRKLLQVPREEAKADVVVAQDGSGNCKTISEGVAAAAKLSGKGRVVIHVKAGVYKESVNIPRTVRNLMIIGDGMGATVVTGSNNVQDGSTTFRSATFAVMGDGFIARDMTFENTAGPQKHQAVALRSGADHSVFYRCGFKGYQDTLYVYSQRQFYRDCDIYGTIDFIFGDSVTVLQNCNIFVRKPMSNQQNTVTAHGRTDPNENTGIIIHNCRVTAAGDLKPVQGSVETYLGRPWQKYSRTVVMKSNIDALVSPAGWAPWAGSFALSTLYYGEYMNVGAGASTGGRVKWAGFHAITNPAEAGKFSVGNFLAGDSWIPGSGVPFDAGL* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0126 552 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Lja4g0126 552 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 22 551 - -
Lja4g0126 552 Gene3D - 234 552 IPR012334 -
Lja4g0126 552 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 178 IPR035513 -
Lja4g0126 552 ProSitePatterns Pectinesterase signature 1. 266 285 IPR018040 -
Lja4g0126 552 CDD PMEI-like_3 28 179 - -
Lja4g0126 552 SMART PMEI_2 21 174 IPR006501 GO:0004857
Lja4g0126 552 TIGRFAM PME_inhib: pectinesterase inhibitor domain 29 178 IPR006501 GO:0004857
Lja4g0126 552 Pfam Plant invertase/pectin methylesterase inhibitor 29 174 IPR006501 GO:0004857
Lja4g0126 552 SUPERFAMILY Pectin lyase-like 237 551 IPR011050 -
Lja4g0126 552 Pfam Pectinesterase 240 538 IPR000070 GO:0030599|GO:0042545
Lja4g0126 552 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 179 IPR035513 -
Lja4g0126 552 PANTHER PECTINESTERASE 22 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0126 Lja-Chr4 974154 977518 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0126 29 552 Carbohydrate Esterase AT1G23200 53.039 0.0 541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0126 4 974154 977518 Lja4g0126 4 974154 977518 ECH