Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0123 ATGAAAACCCAACGCCTTCACCACCTTATCCTCTGCCTCATCTTCTCCGCCGCGGCATTCTCCAACGCCGTAGATGAAGCCCCCGCCACCGGCACCGACGGCGACGCCGATTTCATCCGCACAAGTTGCAACACCACACTGTACCCAGACGTATGCTACACCTCCCTCTCTCGCTACGCCAATGCAGTCCAACAAAACCCTGGCCAACTCGCTCGCATCGCCATCGCCGTAACCCTCTCAAAGGTCCACCGCACCGCCTCCTACCTCACCAACCTCACGCGCGTGACCGACTACAGCGCAGAAGGCAGCAGTTCCCTCGCCGCACAGGCGCTCCGTGATTGCTTCTCGAACCTCGACGACGCCGTGGACGAAATCCGCGGCTCGCTGAAGCAGATGCGACAGATTGGAGCCGCCGGCGCCGGCGCCGGCACCGGATCGTTCTTGTTCCAGATGAGCAACGTGCAGACGTGGATGAGCGCGGCGCTCACCGACGAGGAGACGTGCACGGACGGGTTCCAGGATGTGGCGGAGTGTCCGGTGAAGGTCGACGTGTGCGATCGCGTGACGAAGGTGAAGAAGTTCACGAGTAATGCGTTGGCGCTTGTGAACCGTTACGCCAACAAGGGAATGCCGTGA 636 0.6132 MKTQRLHHLILCLIFSAAAFSNAVDEAPATGTDGDADFIRTSCNTTLYPDVCYTSLSRYANAVQQNPGQLARIAIAVTLSKVHRTASYLTNLTRVTDYSAEGSSSLAAQALRDCFSNLDDAVDEIRGSLKQMRQIGAAGAGAGTGSFLFQMSNVQTWMSAALTDEETCTDGFQDVAECPVKVDVCDRVTKVKKFTSNALALVNRYANKGMP* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0123 211 CDD PMEI-like_3 41 207 - -
Lja4g0123 211 PANTHER PECTINESTERASE INHIBITOR-LIKE 8 208 - -
Lja4g0123 211 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 205 IPR035513 -
Lja4g0123 211 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR SUPERFAMILY PROTEIN 8 208 - -
Lja4g0123 211 Pfam Plant invertase/pectin methylesterase inhibitor 37 201 IPR006501 GO:0004857
Lja4g0123 211 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 205 IPR006501 GO:0004857
Lja4g0123 211 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 205 IPR035513 -
Lja4g0123 211 SMART PMEI_2 34 201 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0123 Lja-Chr4 950036 951061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0123 39 201 Carbohydrate Esterase AT5G53370 27.273 2.27e-11 60.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0123 4 950036 951061 Lja4g0123 4 950036 951061 ECH