Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0047 ATGGATCAAAGAGTAGATCAAACAGGACCTCTACGGTCTCCCTTGATTCAAATCTTGGGGCAAGATGGAATAAGAGTCGATAATGATAGCAAGAAGAGTATAGTAGAACTAGAAAGAAGAGATGTTTTTGAAGAAGTTAAGAAGCAGTTATGGCTGGCAGGGCCTTTGGTATCAGCAGGTCTGCTGAACTTTTGCATACAGATCATATCTGTTATGTTTGTGGGCCATCTAGGTGAGCTGCCTCTGGCTGGTGCTTCAATGGCCACTTCTTTTGCTTCTGTCACTGGTATTAGCTTGTTGCTGGGAATGGCCAGTGCCTTGGATACCTTTTGTGGGCAGTCATATGGAGCAAAGCAGCACAGAATGTTAGGCATACACATGCAAAGGGCCATGCTCACTCTTGTGATTGTCAGCATACCCTTAGCAATCATTTGGGCAAACACAAGGTCCATTCTGGTTTTCTTTGGCCAAGATCCTGAAATATCTGCAGAAGCAGGGAAATATGCTCAGTTAATGGTTCCAAGCCTTTTTGCCTATGGTCTTCTTCAATGTCTAAACAGATTCTTACAAACACAAAATATTGTATTGCCAACTATGTTCAGCTCTGGAGTTACTACTTTGCTACATCTTGTTGTGTGTTGGATTTTGGTATTCAAATGCGGTTTAGGGAGTAGAGGAGCTGCCATAGCAAATTCTATATCTTATTCGGTGAATGTTTTGATACTATCACTCTATGTCAAGTTTTCTCCTTTGTGTGCAAAAACTTGGACAGGGTTTTCAAAAGAGGCACTGCATAACATTCCCTCTTTTCTGAGACTGGCCATTCCTTCAGCTATTATGGTTTGCTTGGAAATGTGGTCATTTGAAATGATGGTTCTCCTATCTGGTCTTCTACCAAATCCAAAGTTGGAAACATCAGTGCTTTCTATCTGCTTGAATACAGCAGAAACTGTTTGGATGATCCCCTTCGGTTTCAGTGCAGCTGTGAGCACTCGCATATCAAATGAACTAGGAGGTGGTCATCCTTTGGCTGCAAATTTAGCAGTGTATATTGTGTTAGTATTGGCCCTCATCGAGGGAAGCTTGGTTGGAACTGTGATGATACTAATGCGCTATATTTGGGCCTACGCCTATAGTAATGAAGCAGAAGTGGTCGAATATGTAGCAATCATGTTGCCAATTCTTGCAGTATCCAACTTCTTGGATGGATTTCAGTGTGTACTTTCAGGCACAGTTAGAGGATGTGGTCGGCAGAAAATTGGTGCATTCATCAATTTAGGCTCTTATTATCTAGTTGGGATTCCATCAGCTATCCTGCTAGCTTTTGTATTGAATATTGGAGGGAAGGGGCTCTGGCTGGGGATCATTTGTGCACTCATTGTTCAAGTATTATCTCTATTGATCATCACCTTACGTACTGATTGGGAGCAAGAGGCAAAGAAGGCTAGTGAAAGAGTTTATGATTCTATAATAGCAGAGAATGCAGTCTCTTGA 1494 0.419 MDQRVDQTGPLRSPLIQILGQDGIRVDNDSKKSIVELERRDVFEEVKKQLWLAGPLVSAGLLNFCIQIISVMFVGHLGELPLAGASMATSFASVTGISLLLGMASALDTFCGQSYGAKQHRMLGIHMQRAMLTLVIVSIPLAIIWANTRSILVFFGQDPEISAEAGKYAQLMVPSLFAYGLLQCLNRFLQTQNIVLPTMFSSGVTTLLHLVVCWILVFKCGLGSRGAAIANSISYSVNVLILSLYVKFSPLCAKTWTGFSKEALHNIPSFLRLAIPSAIMVCLEMWSFEMMVLLSGLLPNPKLETSVLSICLNTAETVWMIPFGFSAAVSTRISNELGGGHPLAANLAVYIVLVLALIEGSLVGTVMILMRYIWAYAYSNEAEVVEYVAIMLPILAVSNFLDGFQCVLSGTVRGCGRQKIGAFINLGSYYLVGIPSAILLAFVLNIGGKGLWLGIICALIVQVLSLLIITLRTDWEQEAKKASERVYDSIIAENAVS* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0047 497 Pfam MatE 276 438 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja4g0047 497 Pfam MatE 55 215 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja4g0047 497 PANTHER PROTEIN DETOXIFICATION 27 485 - -
Lja4g0047 497 CDD MATE_eukaryotic 45 481 IPR045069 GO:0042910|GO:1990961
Lja4g0047 497 PANTHER MULTIDRUG RESISTANCE PROTEIN 27 485 - -
Lja4g0047 497 TIGRFAM matE: MATE efflux family protein 55 452 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0047 Lja-Chr4 391471 395732 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2158 2 24384925 24388267 Lja4g0047 4 391471 395732 ECH
Lja5g0336 5 3020218 3023852 Lja4g0047 4 391471 395732 ECH
Lja4g0047 4 391471 395732 Lja4g0047 4 391471 395732 ECH
Lja4g0047 4 391471 395732 Lja2g2160 2 24398136 24400810 PCT
Lja2g2162 2 24442897 24446697 Lja4g0047 4 391471 395732 PCT