Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0016 ATGGAAGACATCCTCGGCCTTCTAAGGATTCGCATCAAGCGTGGTGTCAACCTCGCCGTTCGTGATGTCAATACCAGTGATCCATACGTCGTGGTTAAGATGGGCAAGCAGAAACTCAAGACTCGTGTGATTCATAAGGATATTAATCCTGAGTGGAATGAAGACCTTACACTTTCCATTACAGACCCTGTTAAGCCATTTGTATTGACTGTGTATGATCATGACACATTTAGCAAAGATGACAAAATGGGAGATGCAGAATTTGACCTGTCACCATTTATAGAAGCCTTAAAGATGAATTTAGAAGGTCTTCCAAGCGGCACTATAGTCACCAGAATACAACCATGCAGGACAAACTGCTTGGCGGAGGAGAGTTGCATCACTGTTAACGATGGCAAAGTTGTCCAAGATGTTGTCCTCAGATTGCGACACGTGGAATGCGGTGAGGTCGAAATCCAATTGCAGTGGATTGATCTTCCTGGTGCCAAGGGTTTATCTGTATCATGA 507 0.4418 MEDILGLLRIRIKRGVNLAVRDVNTSDPYVVVKMGKQKLKTRVIHKDINPEWNEDLTLSITDPVKPFVLTVYDHDTFSKDDKMGDAEFDLSPFIEALKMNLEGLPSGTIVTRIQPCRTNCLAEESCITVNDGKVVQDVVLRLRHVECGEVEIQLQWIDLPGAKGLSVS* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0016 168 CDD C2_ArfGAP 5 148 - -
Lja4g0016 168 Pfam C2 domain 6 92 IPR000008 -
Lja4g0016 168 Gene3D C2 domain 3 164 IPR035892 -
Lja4g0016 168 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4-LIKE 1 164 - -
Lja4g0016 168 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 109 IPR035892 -
Lja4g0016 168 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Lja4g0016 168 SMART C2_3c 7 102 IPR000008 -
Lja4g0016 168 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 164 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0016 Lja-Chr4 142759 148340 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0016 38 166 C2H2 Transcription Factor Family AT1G70790 60.305 2.21e-52 162
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0016 4 142759 148340 Lja2g2191 2 24937981 24940951 PCT