Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5126 ATGAATAGAAAAATCCACTCTTCCTATTTGGTGCTACTTCTTACCTTCCTAGTCCTCCTTGTAGATATCACATCTAACACAGAATTGGACAACGACATTGCAATTTACTGGGGACAAAATGATGATGAATGGAGCCTGAGAGAAACATGTGCAACTGGGAAATACTCCTATGTAATCATAGCCTTCCTGAACAAATTTGGGAATGGCAAGACCCCTGAAATGAACCTGGCAAGTCACTGTGATCCTTCTTCCAATGATTGCACTGCTTTAAGCACAGACATCAGGAGTTGCCAAATGCAAGGGATCAAAGTCTTGCTGTCCATTGGAGGAGCCGTTGGAGATTACAGTCTAGCTTCCTCTGATGATGCTGCAACCGTTTCTGATTACTTGTGGAACAATTTCTTGGGGGGCAACAACTCGAATTCGCGTCCACTTGGGGATGCTGTATTAGATGGCATTGATTTTGATATAGAGAACTCCACAGGGAAACACTGGGAGGAACTTGCACGTGACCTCAAGTCACATAGCACCTCAGCACAAAACGTTTACTTGAGTGCAGCACCTCAGTGCCCATTTCCTGATGGTGAACTGGGCATTGCACTTGACACGGGATTTTTTGACTTTGTTTGGATACAGTTCTACAACAATCCTGAGTGTGAATATACCCAAAGCAATGCCTTAAACTTGTTGAGTTCATGGAATCAATGGACAGCATCATTGAAAGTGGGAAAAGTCTTTTTAGGATTGCCTGCATCTCCAGCAGCAGCAAATAATGGCTATGTTCCTGCTGATTCGTTGGCATGTAACATTCTTCCTGTCATAAAAAAGTCCCCTAACTATGGAGGTGTGATGCTGTGGACAACGTACTATGATAAACAAAGCGGATACAGCTCCTTCATCAGAAGTTCTCTTTGCCCACCTGAATATGGAGGAAATGACAGCCACAAAGCATACAACTGGTGGATGTGGCTTATCATTGGGGTCGGAGCAGCCCTTGCAATATCCCTCATCTTCTACTTGTGCTGTACCCTGCGAAGAAAAGACAAAGCAGAAGGGGATGGAAAAATGAACCAAGCAATGAATATTGAAATGGAGGACAGGGCAAGTAATGAGGACAAAATGTTAAGTTTTGAAAGCATTGTTGCTTCGAGAGAGATGAAAGAATAA 1167 0.4327 MNRKIHSSYLVLLLTFLVLLVDITSNTELDNDIAIYWGQNDDEWSLRETCATGKYSYVIIAFLNKFGNGKTPEMNLASHCDPSSNDCTALSTDIRSCQMQGIKVLLSIGGAVGDYSLASSDDAATVSDYLWNNFLGGNNSNSRPLGDAVLDGIDFDIENSTGKHWEELARDLKSHSTSAQNVYLSAAPQCPFPDGELGIALDTGFFDFVWIQFYNNPECEYTQSNALNLLSSWNQWTASLKVGKVFLGLPASPAAANNGYVPADSLACNILPVIKKSPNYGGVMLWTTYYDKQSGYSSFIRSSLCPPEYGGNDSHKAYNWWMWLIIGVGAALAISLIFYLCCTLRRKDKAEGDGKMNQAMNIEMEDRASNEDKMLSFESIVASREMKE* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5126 388 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 150 158 IPR001579 GO:0004553|GO:0005975
Lja3g5126 388 SUPERFAMILY (Trans)glycosidases 31 300 IPR017853 -
Lja3g5126 388 Gene3D Glycosidases 31 302 - -
Lja3g5126 388 PANTHER ENDOCHITINASE 12 303 - -
Lja3g5126 388 CDD GH18_hevamine_XipI_class_III 31 302 IPR045321 -
Lja3g5126 388 Pfam Glycosyl hydrolases family 18 33 291 IPR001223 GO:0005975
Lja3g5126 388 PANTHER ACIDIC ENDOCHITINASE 12 303 - -
Lja3g5126 388 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 31 307 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5126 Lja-Chr3 93618878 93620488 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5126 9 304 Glycoside Hydrolase AT5G24090 54.730 9.21e-122 353