LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g5125	ATGCTTATGGATTTCTTTGGAAGAGCCCTTCTCTTCCTCACTCTGACCTTCACATTGAACTTCACAAGCCTTCAGTGTTTAAAGCCTGGCGATGACACATTAATGCAAAGAGATTACTTGGGACTAGGAACACTCACCTCGGCTTCTCAGTTCTACAGCCTAAGGTTCACCAGAATGGCACATGATCATAATAGTGGAAGAGTGTACCTAGGAATAACAAGCAGCGCAGGGTGGTTTCTCTGGCTTGCCAACCAGAACACCCCACTTCTTAAAGGACAAGCAAAACTTGTTATTGATGATTACGGTAGCTTGAAAATCATGTACCACAATGACAAGGAGGCCATTGTTTTATACTCAAGCCAAGCTGAACAAAAGATCAATGCCAGTGCCACTCTGCTCAACACAGGCAACTTTGTACTGCATCAAATGAATACAGATGGAACTGTGAAACAGGTTTTGTGGCAAAGTTATGATCACCGAAATTACATCATGGTTCCAGGAATGAGGGTGGGATTCAACAAGCTAACAGGGCAGAATTGGACCCTGACATCTTGGACAAGCGAAAACACACCAGCTACTGGTTCCTTCACTCTTGGTGTGGACCCAAACAGCAAAGAGCAATTGGTCATATGGTGGAATGGTACACTCTATTGGACTAGTGGACCATTTTCTGATGGAAGTTTCAGCAATTTGAATGCAACATCAGGGAGAAATATCAACACCTATTTCACCTATGTTTCAAACGAAAATGAAACATATTTCAGTTTTAATTCCACATCATCACCCTCGCCTTATTTAGATTACATTGGTTTGAATCCATTTGGTCAACTATATGGCAGAGTCTCTGTCTCTTGCAGGAGTGCACGTGTTAGAGGTTGCGTGGCTCAAAGCTTCCCAACCTGCAGAAACCAAGGTGCTTATTTATCCATCACCAACCCTCAGTCTGGTAACATGTCACCACCAAAAGGGTACAAGAACAAGGAGTATGATAAGCTTTCTCTTCATGATTGTGGAGTCAAGTGCTTGAATAATTGCTCTTGTTTTGCCTTCTCTCACACAAACGATGACAACTCTGGCTGCCAGATATGGAGTAGAGGGAGCAAATTTGCTTCATCTAATTATGGGCGACCAATTTATTTCATCCCTGGAAATATCACTACCAATGGCGGAAAATCTAAGGCAAAGCAAAAATGGAAGCGAAAGAAGATGTTATATGATATTGGAGGGATTGCAACACCTTCCCAATCCCCAGTATACAGCAAACGCAAAAGAAGTAAGAAAATTCATACCACAAAGTATGGGATGCACATGTTCAGCTTTGAAAGCATTGAATCAGCTACTGACAATTTCTCTTCAGCAAATAAGCTGGGTGAGGGTGGCTTTGGACCTGTCTATAAGGGACAATTACTTGATGGGCGAGAAATAGCAATAAAAAGACTTTCTACAAGCTCATGGCAGGGGTTAACAGAGTTTAAAAATGAGGTTAAATTAATTGCCAAACTCCAACATACTAACTTAGTCAAGCTTCATGGTTTTTGCATTGAACGAGAGGAAAGGATGTTGATCTATGAATATATGCCCAACAAAAGTTTGGACTTTTACCTTTTTGATTCCAAAAATAAGATTTTGTTGGATTGGAAGAGACGATTGGGCATCATACAAGGAATAACACGAGGGATTGTTTATCTCCATACATATTCAAGACTAACAGTAATTCACAGAGACTTAAAACCTAGTAATATTTTACTTGATTCTGACATGAATCCAAAGATATCTGATTTTGGTTTGGCAAGAATATTTGGATTGAAAGAATCCAAACAAAATACAAATCGAGTTGTTGGAACTTATGGCTATATGTCTCCTGAATATGCTTTAAATGGCATTGTCTCACCTAAAATTGATGTTTTTAGTTTTGGGGTAATGGTGCTTGAGATAATTAGTGGAAAGAAGAATGCTAGTATTTATGCTTCAGATTATCCACACAGTCTTCTAGGACGTGCTTGGGAATTGTGGAATACTGGTAAAGCTTTAGAATTAATAGACCCTATATTAAATGGGTCATGTGATGTCAATGAAGTTTTGAGATGCATTCATATAAGCCTTTTGTGTGTGCAAGATCAAGCTGAAGACAGACCAACTATGTCAGATGTGGTATTTTTCCTATCAGGTGAGGCTATTCAGCTTGCGAGACCGAAACAACTAGCACTCTTTCCCCATAAGAAGAATAAGTCTATATGTCCTATCATTGATCAAAATGTTCACTCTATAAATAGTGTAACAATTTCAACATTGAGTGCTAGATAA	2304	0.3941	MLMDFFGRALLFLTLTFTLNFTSLQCLKPGDDTLMQRDYLGLGTLTSASQFYSLRFTRMAHDHNSGRVYLGITSSAGWFLWLANQNTPLLKGQAKLVIDDYGSLKIMYHNDKEAIVLYSSQAEQKINASATLLNTGNFVLHQMNTDGTVKQVLWQSYDHRNYIMVPGMRVGFNKLTGQNWTLTSWTSENTPATGSFTLGVDPNSKEQLVIWWNGTLYWTSGPFSDGSFSNLNATSGRNINTYFTYVSNENETYFSFNSTSSPSPYLDYIGLNPFGQLYGRVSVSCRSARVRGCVAQSFPTCRNQGAYLSITNPQSGNMSPPKGYKNKEYDKLSLHDCGVKCLNNCSCFAFSHTNDDNSGCQIWSRGSKFASSNYGRPIYFIPGNITTNGGKSKAKQKWKRKKMLYDIGGIATPSQSPVYSKRKRSKKIHTTKYGMHMFSFESIESATDNFSSANKLGEGGFGPVYKGQLLDGREIAIKRLSTSSWQGLTEFKNEVKLIAKLQHTNLVKLHGFCIEREERMLIYEYMPNKSLDFYLFDSKNKILLDWKRRLGIIQGITRGIVYLHTYSRLTVIHRDLKPSNILLDSDMNPKISDFGLARIFGLKESKQNTNRVVGTYGYMSPEYALNGIVSPKIDVFSFGVMVLEIISGKKNASIYASDYPHSLLGRAWELWNTGKALELIDPILNGSCDVNEVLRCIHISLLCVQDQAEDRPTMSDVVFFLSGEAIQLARPKQLALFPHKKNKSICPIIDQNVHSINSVTISTLSAR*	768

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g5125	767	Pfam	PAN-like domain	317	365	IPR003609	-
	Lja3g5125	767	ProSiteProfiles	Protein kinase domain profile.	450	721	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja3g5125	767	SMART	blect_4	37	160	IPR001480	-
	Lja3g5125	767	Gene3D	-	28	158	IPR036426	-
	Lja3g5125	767	Gene3D	Transferase(Phosphotransferase) domain 1	526	732	-	-
	Lja3g5125	767	CDD	STKc_IRAK	456	718	-	-
	Lja3g5125	767	ProSiteProfiles	PAN/Apple domain profile.	301	378	IPR003609	-
	Lja3g5125	767	SUPERFAMILY	alpha-D-mannose-specific plant lectins	79	189	IPR036426	-
	Lja3g5125	767	SMART	serkin_6	450	684	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja3g5125	767	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	571	583	IPR008271	GO:0004672\|GO:0006468
	Lja3g5125	767	PIRSF	SRK	278	767	IPR024171	GO:0004674
	Lja3g5125	767	PIRSF	SRK	3	277	IPR024171	GO:0004674
	Lja3g5125	767	ProSiteProfiles	Bulb-type lectin domain profile.	31	153	IPR001480	-
	Lja3g5125	767	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	77	761	-	-
	Lja3g5125	767	Pfam	D-mannose binding lectin	80	185	IPR001480	-
	Lja3g5125	767	Gene3D	Phosphorylase Kinase; domain 1	412	525	-	-
	Lja3g5125	767	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE	77	761	-	-
	Lja3g5125	767	Pfam	Protein kinase domain	452	652	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja3g5125	767	SUPERFAMILY	Protein kinase-like (PK-like)	433	750	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g5125	Lja-Chr3	93612326	93617902	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g5125	438	733	Receptor kinase-like Gene Family	AT4G05200	58.108	6.21e-122	380

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lja3g5125		Pkinase	4.4e-45	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja3g5125	3	93612326	93617902	Lja3g5125	3	93612326	93617902	ECH