Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5019 ATGGCATCTTCATCTTCATCTTCATCTTCTTCTTCCCATGTTCCTAGAATCAAATATGATGTCTTTGTTAGCTTCAGAGGCACAGACATACGCTATGGTTTTCTCAGCCATTTGAAGAAGGAGCTTCGCCAGAAGCAAGTGGATGCCTTTGTAGATGACAGGCTTGAAGGGGGAGATGAAATATCACATGCACTTGTCAGAGCAATTGAAGGGTCACTCATGTCTTTGGTCATATTCTCCAAGGACTATGCTTCTTCTAAATGGTGCTTGGAGGAGCTTGTGAAAATAGTTGAGTGCATGGACACAAGTAAACAGGTTGTGATTCCTGTTTTCTACAATGTTGATCCATCTCATGTGCGGCACCAGAAAGGAGCTTATGGAGATGCCTTGGATAAACATGAAAAGAGTAAAAGAAACTTAGCCAAGGTGCAAAATTGGAGATCTGCTTTGAGTGTAGCTGCTAATCTTTCTGGATTTCATTCATCAAAATTTGGGGATGAAGTTGAGCTTATAGAAGCAATTGTCAAATCTTTGTCATCCAAGTTGAATCTTATGTACCAAAGTGAGTTAACAGACCTTGTTGGAATTGAAGAACGGATTGCAGAGTTGGAGTCACAATTGCGCCTAGGGTCGACAATGGATGTTCTTGCCCTTGGAATTTGGGGCATGGGGGGAATTGGTAAGACAACTATTGCAGCTGCAGTATATAACCGTCTTTGTTTTGAATTTGAAGGGTGTTGCTTTATGGCAAACATAAGGGAAGAATCAGAGAAACATGGAATGATTTATCTGAAGAATAAAATTCTCTCTATATTACTAAAGGAAAATGATCTACATATTGGCACACCTAATGGAGTTCCCCCTTATGTTAAGAGAAGGCTCGTTCGTAAAAAGGTTCTTCTTGTTCTTGATGATATCAGTGATTCAGAGCACCTAGAAATTTTAGTTGGAGCACTTGATTGGTTTGGATCTGGTAGCAGAATTATTGTAACAACTAGAGATAAGCAAGTGCTTGGTAAAATAGTTGACAGTATATATGAGGCAAAGGCATTAAACTCTGATGAAGCTATTAAGCTTTTCATTATGAATGCCTTCGAGCAACAAAGTTGTGTTGATATGGAGTGGAATGAGTTATCAAGAAGGGTGATTCAGTATGCTAATGGAAACCCATTAGCTTTGAAAGTTTTGGGCTCTTTTCTTTATGGTAAAAGCAAGATAGAATGGTTAAGCCAATTGCAGAAACTTAAGAAAATGCCTCACTCCAAAATCCAAAATGTGTTGAGATTGACTTATGATAGACTTGATCGAGAGGAGAAAAACATCTTTCTATACATTGCATGTTTTTTGAAAGGATATGAATTACACCGAGTAATAGTTCTGCTTGATGCTTGTGGTTTGTCAACAATTATTGGGTTAAGAGTCCTTAAAGATAAAGCCCTTATCATTGAAGCCAAGGGCTCTGGAAGATCAATTGTGTGGATGCATGACTTGATACAAGAAATGGGTTGGGAGATTGTTCGAGAAGAATGTATTGAAGACCCTGGGAAACGCAGTAGGTTATGGGATCCTAATGATATTCATCAAGTGTTGGAAAATAACACGGGAACTAAAGCCATTAAAAGCATAACTCTGAACGTCTCAAAAATTGATGAGCTGTGCTTAAGTCCTCAAGTCTTTGCTGGGATGCCAAGATTGAAGTTTCTTAATTTTACCCAACCTTATGCTGATGATCAAATCCTGTATTTTCCTCAGGGCCTTGAATCTTTTCCAACTAAGCTACGACTTCTAAATTGGGTTAGTTATCCTTTGAAATCCTTGCCTCAGTTTTTTTGTGCAGAAAATCTTGTTGAGCTCAAAATGACTTGGAGCCGAGCGGAAAAACTCTGGGATGGGATTCAGAATCTTGAACATTTAAAGAAAATTGACCTGAGTTATTCCAAGTATCTGATAGAGCTCCCAGATTTTTCAAAGGCCTCAAATCTTGAAGAAGTAGAACTCTACGCTTGCAGAAATTTGCTGAGTGTTCATCCCTCTATCTTATCTCTTAACAAGCTTGTGCGGTTGAACCTTTTTTACTGCAAAGCGCTTACCAGTCTTCGAAGCGAAACCCATTTAAGATCCCTCCGTGACCTCTTCCTCGGTGGCTGCTCAAAACTCCAAGAGTTTTCAGTGACTTCAGAGAGCATGAAAGACTTGACTTTAACTTCAACTGCTATCAATGAATTGCCCTCATCAATTGGGAGTCTCAGAAACCTGGAAATGCTGACTCTTGATAACTGCAAAAGTCTAAGCAATCTTTCAAACAAGGTTGCTGAGCTAAGATCACTTCGGGAGCTTCATGTTCATGGTTGCACACAGCTTGATGCATCAAATCTGCATGTCCTGGTTAATGGTTTGAGGTCTTTGGAAACATTAAAGCTGCAAGAATGTCGAAACTTGTTCGAGATTCCAGACAACATCAGCCTCCTATCTTCATTGCGCCAATTGTTACTAACCGGAACAGATATTGAGAGATTTCCTGCAACAATAAAGCAACTTTCTAACCTTGAAAAGATTGACTTAAGGGATTGCAAGAGGCTTTGTTATCTGCCAGAACTTCCACTATCCTTGAAAGAGTTACATGCCAATAACTGTTCATCCTTGGAGACTGTAATGCTTACTTCAAGAGCTATTGAACTACTACATCAACAAGCAAATAAGATGCACACACAATTCCAAAATTGTGTAAATTTGGATAAGTATTCACTCAGTGCTATTGGAGTTAATGCTCATGTAAGCATGAAGAAATTGGCATATGATAATCTCTCATCATTAGGAAGCAAGTTTCTTGATGGTCCAGTTGATTTTATGTACCCTGGAAAAAAAGTTCCAGAGTGGTTCATGTACAGGTCAACACAGGCTTCAGTAACTCTTGATCTGTGTTCTGCTCCGCGTTCCAAATTTATGGGTTTCATATTCTGCGTCATTGTCGGTAAGTTCCCATCAGATGACAACAACTTCATAGGGTGTGACTGTTACCTGGAAACCGGTAACAGCGAAAGGGTCAAAATGGATGCATGGACTAGTATCCACGCCGGTAAATTTGTTTCTGATCATGTCTGTATGTGGTATGATCAACGATGCTGTCTGCAAAGCAGTGAATGTGAAAATGATAGTATGGAAATGGAAGAACATGTGGCTGGTTGCAATATTCCAAAGGTTTCATTTGAATTCTTTGCTCAAAGTGGAAGCACTTGGAAAAAGCATGATGATATCATTGTAAAAGGGTGTGGAGTGTGTCCTTTATACGACACAGAATATGACAATTTCATAAAGCAAATGGAATTGGAGTTGGAAACCACTTTGCAGTCTATAGCAAAAATTTCAGTTGCATGCTCTGTTAAGAAAGAAACACAATGTAAGAAATTCTTTCCCCCCCTTCAGATTGGGACATGGAAGAGTGCAACACAGGGATTGAAAGACATATTGTTCTTCTGA 3477 0.3926 MASSSSSSSSSSHVPRIKYDVFVSFRGTDIRYGFLSHLKKELRQKQVDAFVDDRLEGGDEISHALVRAIEGSLMSLVIFSKDYASSKWCLEELVKIVECMDTSKQVVIPVFYNVDPSHVRHQKGAYGDALDKHEKSKRNLAKVQNWRSALSVAANLSGFHSSKFGDEVELIEAIVKSLSSKLNLMYQSELTDLVGIEERIAELESQLRLGSTMDVLALGIWGMGGIGKTTIAAAVYNRLCFEFEGCCFMANIREESEKHGMIYLKNKILSILLKENDLHIGTPNGVPPYVKRRLVRKKVLLVLDDISDSEHLEILVGALDWFGSGSRIIVTTRDKQVLGKIVDSIYEAKALNSDEAIKLFIMNAFEQQSCVDMEWNELSRRVIQYANGNPLALKVLGSFLYGKSKIEWLSQLQKLKKMPHSKIQNVLRLTYDRLDREEKNIFLYIACFLKGYELHRVIVLLDACGLSTIIGLRVLKDKALIIEAKGSGRSIVWMHDLIQEMGWEIVREECIEDPGKRSRLWDPNDIHQVLENNTGTKAIKSITLNVSKIDELCLSPQVFAGMPRLKFLNFTQPYADDQILYFPQGLESFPTKLRLLNWVSYPLKSLPQFFCAENLVELKMTWSRAEKLWDGIQNLEHLKKIDLSYSKYLIELPDFSKASNLEEVELYACRNLLSVHPSILSLNKLVRLNLFYCKALTSLRSETHLRSLRDLFLGGCSKLQEFSVTSESMKDLTLTSTAINELPSSIGSLRNLEMLTLDNCKSLSNLSNKVAELRSLRELHVHGCTQLDASNLHVLVNGLRSLETLKLQECRNLFEIPDNISLLSSLRQLLLTGTDIERFPATIKQLSNLEKIDLRDCKRLCYLPELPLSLKELHANNCSSLETVMLTSRAIELLHQQANKMHTQFQNCVNLDKYSLSAIGVNAHVSMKKLAYDNLSSLGSKFLDGPVDFMYPGKKVPEWFMYRSTQASVTLDLCSAPRSKFMGFIFCVIVGKFPSDDNNFIGCDCYLETGNSERVKMDAWTSIHAGKFVSDHVCMWYDQRCCLQSSECENDSMEMEEHVAGCNIPKVSFEFFAQSGSTWKKHDDIIVKGCGVCPLYDTEYDNFIKQMELELETTLQSIAKISVACSVKKETQCKKFFPPLQIGTWKSATQGLKDILFF* 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5019 1158 Gene3D - 185 346 IPR027417 -
Lja3g5019 1158 Pfam TIR domain 18 195 IPR000157 GO:0007165
Lja3g5019 1158 Pfam C-JID domain 951 1099 IPR045344 -
Lja3g5019 1158 Coils Coil 186 206 - -
Lja3g5019 1158 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 159 IPR035897 -
Lja3g5019 1158 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 749 1113 IPR044974 GO:0006952
Lja3g5019 1158 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 758 IPR044974 GO:0006952
Lja3g5019 1158 PRINTS Disease resistance protein signature 386 400 - -
Lja3g5019 1158 PRINTS Disease resistance protein signature 293 307 - -
Lja3g5019 1158 PRINTS Disease resistance protein signature 217 232 - -
Lja3g5019 1158 PRINTS Disease resistance protein signature 844 860 - -
Lja3g5019 1158 ProSiteProfiles TIR domain profile. 17 182 IPR000157 GO:0007165
Lja3g5019 1158 Gene3D - 350 435 IPR042197 -
Lja3g5019 1158 SUPERFAMILY L domain-like 493 916 - -
Lja3g5019 1158 Pfam NB-ARC domain 199 421 IPR002182 GO:0043531
Lja3g5019 1158 Gene3D Ribonuclease Inhibitor 519 728 IPR032675 -
Lja3g5019 1158 Gene3D Ribonuclease Inhibitor 729 919 IPR032675 -
Lja3g5019 1158 Gene3D - 16 184 IPR035897 -
Lja3g5019 1158 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 749 1113 - -
Lja3g5019 1158 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 14 758 - -
Lja3g5019 1158 SMART till_3 18 156 IPR000157 GO:0007165
Lja3g5019 1158 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 445 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5019 Lja-Chr3 92385426 92392025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5019 19 859 WRKY Transcription Factor Family AT4G12020 33.607 1.28e-115 394