Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4984 ATGGCAGCAGCATTGATAGGTGAAGCCTTCCTCGGTGCTTTCCTTGATGTTGTTTTCGACAAGCTTGCTTCAGCTGAGGTTGTCAACTTTATCCGAGGGAAGAAGCTTTACCCCTTACTTGAAAGGTTGAAGACAACTCTCACAGTGGTTAGAGCTGTGCTTAATGATGCTGAGAAGAGACAGATCAAAGACTCTGATGTTAAAGACTGGCTCAATGAACTCAAAGATGTTGTTTACATAGCTGATGACTTGTTGGATGAAGTTTCTACCAAAGCTGCTACTGCAACTCAAAAGGAGCTGGTAACTACTTCTAACTTGTTCTCTCGCTTTTTCAATGCACAAGATAGGGAGATCGCTACTAGGTTGACAGAAATAGTTGACAAGCTAGAGCATATCTTAAAACTCAAAGAGAGTCTTGATCTCAAAGAGATTGCTGATGATAATTCATCATCTAGAATTCCATCAACATCTGTGCCCGATGGATATATATATGGAAGGGATGAAGACAAGGAGGCTATAATCAAGTTATTGTTAGATGATAATAATGAATGTGAACAAGTATCTGTGATCCCTATTGTGGGCATGGGTGGAGTGGGAAAGACCACTCTAGCCCAAATGGGGAAAAAATTCTTATTTATTTTGGATGATGTTTGGATTGAAGATTATGATAGTTGGAATCTTCTTAGAAAACCTTTCCAATACGGGATGAGGGGAAGTGTAATTCTTGTAACAACCCGTAGTGAAAAAGTTGCTTCTCTAGTCCAAACTGTTCAAACTTACCCTTTAAGTCAACTGTCAAATGAAGATTGTTGGTCAGTCTTTGCAAACCATGCATGTTTTTCCTCAGGATCCGGCAAGAACACAACAGCTCTAGAGAAAGTTGGCTTGGAGATTGTTAAGAAGTGTAATGGACTTCCTTTAGCTGCACAATCACTTGGAGGTTTATTGCGAAGGAAGCATGATATTAAGGATTGGAATAATGTCCTGAATTGTGATATTTGGGAATTACCTGAGAGTGAAAGTATGATTATTCCATCGTTGAGAATTAGTTATCATTACCTCCCTCCTCATTTGAAACCTTGCTTTGTTTATTGTTCGTTATATCCAAAAGATTATGAATTAGTGAAAAATGATGTAATCCTGTTGTGGATGGCCGAAGATCTTTTACCACCACCAAAAAAAGGAAAAACTTTGAAAGAATCTTTTGGGATGCATGATCTCATGCATGATTTGGCAACATTTCTTGGTGGGGAATTCTACTTCAAATCAGATGATCTTGGGGAAGAAACTACGATTGGTAGCAGAACTCGGCATTTGTCATTCATCAATAGCAGCAGTCCCAACTCGGAATTTTTTTGTGTCTTGGGTAGTGCTCAATTCCTAAGATCATTTTTGGTTTTGGGAATTAATGGAAATCCTTCATTCGGGAATGAGGTACAGGTACCATGTACTGAGGTGTTGGGTCTGGAGTACTTGAGAGTTTTATCATTTCGTTCTTTCACGAAGCTCAGTGCATTGCCTGATTCTATAGGTGGACCGATCCACTTGCGTTATTTGGATCTCTCCGGGACAGGAATAGAGTCATTGCCGGAGTCACTGTGTAGTTTGTATAATCTGCAAACATTGAAGCTGGAATATTGTGAGAAGCTGACTATGCTACCTAGTGGCATGAAAAATCTTGTAAACTTGCACTATCTTGATTTTTTTCATACTGCCATAAAGGAGATGCCAAGAGGAATGAGCAAATTAAAGCAGTTGCAGCATTTAACTTACTTCTCTGTGGGCAAGCATGGAGAGATCAAGATTAAGGAACTAGGAGGGCTTTCAAATCTTGGTGGATCGTTTACAATTAAGAAACTGGAGAATGTTGAGAATGGTAGTGAAGCGTTGGAGGCAAGACTGATGGATAAGAAGCACATTCAGCATTTAGGATTGCATTGGTCTTTGTATTCCGATGAGGGCTGTATGGATTCCCAAACAGAAATGGATATACTTTGCAAGTTAGAGCCTCACCAAGACCTTCAGTCCCTAGAGATAGAAAGATACAGGGGTACCAGATATCCGGATTGGGTTGGAAAGCCTTGCTACCACAATATGACTAGCATAACACTGTCTGATTGCAATAATTGTTTTACGCTCCCTTCACTTGGAAATCTCCCATCTCTTAGGGAACTGAGTATTTCTGATATGAAGACGTTGGAGACTATTTTCCCGACGGAAGGGTCAGGACGAACGGAAGTCGAAGCGGAAGAAGTATGA 2259 0.4019 MAAALIGEAFLGAFLDVVFDKLASAEVVNFIRGKKLYPLLERLKTTLTVVRAVLNDAEKRQIKDSDVKDWLNELKDVVYIADDLLDEVSTKAATATQKELVTTSNLFSRFFNAQDREIATRLTEIVDKLEHILKLKESLDLKEIADDNSSSRIPSTSVPDGYIYGRDEDKEAIIKLLLDDNNECEQVSVIPIVGMGGVGKTTLAQMGKKFLFILDDVWIEDYDSWNLLRKPFQYGMRGSVILVTTRSEKVASLVQTVQTYPLSQLSNEDCWSVFANHACFSSGSGKNTTALEKVGLEIVKKCNGLPLAAQSLGGLLRRKHDIKDWNNVLNCDIWELPESESMIIPSLRISYHYLPPHLKPCFVYCSLYPKDYELVKNDVILLWMAEDLLPPPKKGKTLKESFGMHDLMHDLATFLGGEFYFKSDDLGEETTIGSRTRHLSFINSSSPNSEFFCVLGSAQFLRSFLVLGINGNPSFGNEVQVPCTEVLGLEYLRVLSFRSFTKLSALPDSIGGPIHLRYLDLSGTGIESLPESLCSLYNLQTLKLEYCEKLTMLPSGMKNLVNLHYLDFFHTAIKEMPRGMSKLKQLQHLTYFSVGKHGEIKIKELGGLSNLGGSFTIKKLENVENGSEALEARLMDKKHIQHLGLHWSLYSDEGCMDSQTEMDILCKLEPHQDLQSLEIERYRGTRYPDWVGKPCYHNMTSITLSDCNNCFTLPSLGNLPSLRELSISDMKTLETIFPTEGSGRTEVEAEEV* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4984 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 365 IPR027417 -
Lja3g4984 752 Gene3D Ribonuclease Inhibitor 465 743 IPR032675 -
Lja3g4984 752 SUPERFAMILY L domain-like 404 736 - -
Lja3g4984 752 Coils Coil 40 60 - -
Lja3g4984 752 PANTHER DISEASE RESISTANCE PROTEIN RP 39 736 IPR044974 GO:0006952
Lja3g4984 752 Gene3D - 264 350 IPR042197 -
Lja3g4984 752 ProSiteProfiles Leucine-rich repeat profile. 515 536 IPR001611 GO:0005515
Lja3g4984 752 Pfam NB-ARC domain 207 330 IPR002182 GO:0043531
Lja3g4984 752 CDD RX-CC_like 40 132 IPR038005 -
Lja3g4984 752 Pfam Rx N-terminal domain 10 96 IPR041118 -
Lja3g4984 752 Gene3D - 15 131 - -
Lja3g4984 752 PANTHER DISEASE RESISTANCE RPP13-LIKE PROTEIN 1-RELATED 39 736 - -
Lja3g4984 752 Gene3D - 142 206 IPR027417 -
Lja3g4984 752 Gene3D - 207 259 IPR027417 -
Lja3g4984 752 Gene3D - 351 413 IPR036388 -
Lja3g4984 752 PRINTS Disease resistance protein signature 189 204 - -
Lja3g4984 752 PRINTS Disease resistance protein signature 717 733 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4984 Lja-Chr3 91997432 92001765 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4984 461 591 WRKY Transcription Factor Family AT4G12020 30.075 1.47e-06 50.1