Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4953 ATGGAAAACTACTACTACGCTTCCTCCTACAGCCCTACCAACTACAGAGTCGGAGGCGGCGGAGGAAGCGGAGGAGTAGGACCATCGCCAACTCGATTCCTCGACGCCAGCACCATGTTCCTCCACCACCACCACCGCACAGACCGCTACCCCTCCGGCGCCGCCGTCGACTTCGACATTACTCCGCCCGGTGTCACTTCCAGAATCCAGTCTTCCGCCACCTCCAACTTGCTCTCTCAACCTACTTCCTGGTCTTCCGCCTTCGCCGCCGCTAACGCCACCTCTTCTGCACTTGACCTCAAACGCTCCGTTGACGCGCTCTACCATCCAACCATTTTGAGCACAATTGGGCCAAGTGAAGCTTGGTATTCTACAAACTCACTGGCCAAGCGCCATAGATATGAAAGTGGAAGCAATATGCCTATGTATCCACAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTCACAAGAACCTGTAAATTCGGAGAGAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGTTCCAAATATTGTTACTAGTGAAACTCCCCCTGAGAGACCAGGAGAACCAGACTGTCCATTCTTTCTGAAAACTCAAAGATGCAAGTTTGGTTCGAGGTGCAAATTTAACCACCCTAAGGTTTCCTCTGATGTTTCCGGCTTACCTGAAAGGCCACTAGAGCCCCCTTGCGCGTTCTACATGAAATCTGGACAATGTAAATTTGGCGCTGCATGCAAATTCCATCACCCCAAAGATATCAAGATTCAGTTGTCTGATGAACCAAATCTTACTGTTGAGCAGACACAAACAAATCCTATGTTAGTGGGGGCAACTGGGGATACACAACCGGTCAAGCCTCTTATATCTCCTCTGTTGAATAATAATAGCAAAGGGCTTCCTATAAGACTGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGAAGTTGCAAGTATGGTACCACTTGCCGCTACAGTCATCCCGACAAGAATGTTAGTCCATCTATTGCTGCATTGGGGTCTTCTGTCTTGGCATCTTCAGCTACTAATCTGAACATTGGAGCTCTTAATCCAGCTCTCTCTGTTTATCAAGCTTATGAACCCAGGCTGTCAAATCCAACGTCTCAGGTGGGAATAGCAGGGCCTATCTATCCTCAGCGGCCTGGACAGATAGAATGCGATTTTTATATGAAAAATGGCGAGTGTAAATTTGGGGAAAGATGCAAGTTCCATCACCCAATTGACCGCTCAGCACCATTACTGTCAAAGCAGGCCTCACAACAAACTGTTAAACTCACTCCTGCTGGATTACCAAGAAGAGAGGGTGCTGCGATGTGTCCATATTATTTGAAAACTGGCACCTGCAAGTTTGGTGCAACCTGCAAATTTGACCACCCACCACCAGGAGAAGTTATGGAGATGGCAAAATCACAAGGAACGTCTGCAAACAATGGAGGGGAAGCAGAAAGCAATGAAAAGGTGTCTGGTTCTGCTCCGGAACAGCAGTGA 1545 0.4841 MENYYYASSYSPTNYRVGGGGGSGGVGPSPTRFLDASTMFLHHHHRTDRYPSGAAVDFDITPPGVTSRIQSSATSNLLSQPTSWSSAFAAANATSSALDLKRSVDALYHPTILSTIGPSEAWYSTNSLAKRHRYESGSNMPMYPQRPGEKDCAHYMLTRTCKFGESCKFDHPIWVPEGGIPDWKEVPNIVTSETPPERPGEPDCPFFLKTQRCKFGSRCKFNHPKVSSDVSGLPERPLEPPCAFYMKSGQCKFGAACKFHHPKDIKIQLSDEPNLTVEQTQTNPMLVGATGDTQPVKPLISPLLNNNSKGLPIRLGEVDCPFYMKTGSCKYGTTCRYSHPDKNVSPSIAALGSSVLASSATNLNIGALNPALSVYQAYEPRLSNPTSQVGIAGPIYPQRPGQIECDFYMKNGECKFGERCKFHHPIDRSAPLLSKQASQQTVKLTPAGLPRREGAAMCPYYLKTGTCKFGATCKFDHPPPGEVMEMAKSQGTSANNGGEAESNEKVSGSAPEQQ* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4953 514 ProSiteProfiles Zinc finger C3H1-type profile. 399 427 IPR000571 GO:0046872
Lja3g4953 514 SUPERFAMILY CCCH zinc finger 456 479 IPR036855 GO:0046872
Lja3g4953 514 ProSiteProfiles Zinc finger C3H1-type profile. 314 342 IPR000571 GO:0046872
Lja3g4953 514 SMART c3hfinal6 399 426 IPR000571 GO:0046872
Lja3g4953 514 SMART c3hfinal6 314 341 IPR000571 GO:0046872
Lja3g4953 514 SMART c3hfinal6 236 263 IPR000571 GO:0046872
Lja3g4953 514 SMART c3hfinal6 452 479 IPR000571 GO:0046872
Lja3g4953 514 SMART c3hfinal6 198 225 IPR000571 GO:0046872
Lja3g4953 514 SMART c3hfinal6 146 173 IPR000571 GO:0046872
Lja3g4953 514 ProSiteProfiles Zinc finger C3H1-type profile. 146 174 IPR000571 GO:0046872
Lja3g4953 514 Gene3D - 107 183 - -
Lja3g4953 514 Gene3D - 184 234 - -
Lja3g4953 514 ProSiteProfiles Zinc finger C3H1-type profile. 198 226 IPR000571 GO:0046872
Lja3g4953 514 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 402 425 IPR000571 GO:0046872
Lja3g4953 514 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 148 172 IPR000571 GO:0046872
Lja3g4953 514 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 240 263 IPR000571 GO:0046872
Lja3g4953 514 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 317 340 IPR000571 GO:0046872
Lja3g4953 514 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 458 479 IPR000571 GO:0046872
Lja3g4953 514 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 200 225 IPR000571 GO:0046872
Lja3g4953 514 SUPERFAMILY CCCH zinc finger 402 428 IPR036855 GO:0046872
Lja3g4953 514 SUPERFAMILY CCCH zinc finger 148 173 IPR036855 GO:0046872
Lja3g4953 514 ProSiteProfiles Zinc finger C3H1-type profile. 452 480 IPR000571 GO:0046872
Lja3g4953 514 SUPERFAMILY CCCH zinc finger 241 263 IPR036855 GO:0046872
Lja3g4953 514 MobiDBLite consensus disorder prediction 488 514 - -
Lja3g4953 514 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 91 493 - -
Lja3g4953 514 Gene3D - 398 494 - -
Lja3g4953 514 PANTHER CCCH ZINC FINGER/TIS11-RELATED 91 493 IPR045877 GO:0003729
Lja3g4953 514 SUPERFAMILY CCCH zinc finger 318 343 IPR036855 GO:0046872
Lja3g4953 514 Gene3D - 235 350 - -
Lja3g4953 514 MobiDBLite consensus disorder prediction 483 514 - -
Lja3g4953 514 ProSiteProfiles Zinc finger C3H1-type profile. 236 264 IPR000571 GO:0046872
Lja3g4953 514 SUPERFAMILY CCCH zinc finger 203 224 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4953 Lja-Chr3 91712521 91719914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4953 450 501 C2H2 Transcription Factor Family AT3G02830 41.509 4.35e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja3g4953 zf-CCCH 1.6e-09 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4953 3 91712521 91719914 Lja3g4953 3 91712521 91719914 ECH