Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4952 ATGGTTTGCTGTGAACAATGGGAACCTCATGTTTTCATTGTTATCATCTACTTGTTGGTGTTGTGTACTGCTTCTCTCCATGTTGTCACAGCCTCAAATAACAGCACTTTGAAGCCAGGAGATAGACTTGATGTCACAGGCGAGCTATGTTCTGAAAAGGGTAAATATTGCATGAATTTTGACCCTGAGTACCTCCGCATATTTGCTCAAGGACAAGATGATTGGGTTGTGTGGATGGCTAACAGAGATAAACCTGCTGACATTGCTTCTGCAACTCTATCACTGAACCACTCTGGTGTTCTAAAAATAGAATCAAAAAATGAGACACTAATTATTCTCTACTCTCCACCTCAACCAGTGAACAACACAGTGGCCACTTTGTTAGCCACAGGAAACTTTGTGCTGGAGCAACTTCACCCCAATGGAAACAAGAGCATGCTGTGGCAGAGTTTTGATTTTCCTACTGACAGTTTGCTTCCTGGGATGAAGCTAGGTGTTAATCACAAAACCCGTCGTAACTGGTCACTGGTTTCAAGCTTCAGTAAATCACTCCCAGCTCCTGGTCCATTCAGGCTTGATTGGGAGCCAAAAACAAAAGAACTTGTTACCAGGAGAGGAAAACAAGTGTACTGGAGAAGTGGGGAACTCAGAAACAAAAGATTTAAGCACATTTCAGCAGAAGCAGAGTACCATGCTATGTTCAATGATGATGAAGAGTACTTCATGTTCACAACACCAAGTGAAGAGCTTACAAAGTGGACTCTGCTAGAGACTGGTCAGCTGATTAACAGGAAGGGGAATGATATTGCAAGGGCTGATAAGTGTTATGGTTATAACACTGATGAAGGGTGCCAAAAGTGGGAGGAGAGACCCACCTGCAGGGCTCGTGGTGATGAATTCGATTACAAGTCTGGTTATCCCAATTTGAACACGGCAAGAAATGTGGTAAATGTGAGATATGGAATTAGTGATTGTCAGGCTATGTGCTGGAGCAACTGCAGCTGTATTGGATTTGCATCCTTTGATAATATTAATGGAACTGGTTGCACATTCTATCAATCAGTGGAAGGTACTAATATTGCAGGCGGCGGTGAAGACTTCTACTTGCTAGTAAAGAGCACCCGTCACAAAGGTTCAAAATGGTGGATGTGGATGTGCGGTGCAATGGCAACTGTTCTGCTCATAATCTTCCATTCCATTTTGTGTCACACCATGACGAAACAAAAATATGTGCGCCAAGAAAAAGCAAACAAAATAAGGACAGAGATGCAAGATATCGAAGCCTCTAGGGGCTCCACTAGTGACAATGATTTACAACTAAATATAAGTGGTGGAGATGACTTGGAACTGTTTAGCTATGCATCAATAATGGTGGCTACCAATGGCTTTTCATTGGATAACAAGTTAGGACAGGGAGGCTTTGGACCTGTTTTTAAGGGAATTCTACCTTCAGGGCAAGAGGTTGCTGTGAAAAAACTTTCAAAAACTTCTGGACAAGGAGCTATTGAATTTAAAAACGAATTAACACTCATATCTAAGCTTCAACATACAAATCTCGTACAGCTACTCGGTCACTGCATTCATCAACAAGAGCGGATGTTGGTCTATGAGTATATGTCAAACAAAAGCTTGGACTGTTTTTTATTTGATGCTTCTGGAAGAGAGTTGCTAGATTGGAGCAAGCGTTTTAGCATAATAGAAGGAATTGGCCAAGGATTACTTTACCTTCACAAATACTCAAGGCTTAAAATTATCCACAGAGATTTGAAGGCTAGTAACATACTCCTTGATGAGAATATGAACCCAAAAATTTCTGATTTTGGTGTCGCGAGAATGTTTACGAAACAAGAAACTGAATCAAATACCAACAGGATTGTTGGGACATACGGTTACATGTCTCCAGAGTATGCCATGGAAGGAGTTTTCTCTACAAAGTCTGATGTGTATAGTTTTGGAGTTCTGCTCCTTGAAATTGTTAGTGGTAGAAGAAACAATAGCTTATGCTCTGAAGAAAGACCACTTAATTTAGTAGGACATGCATGGGAGCTATGGAAAGCAGGTTTGGTTCTTCAGGTGGTTGATCCAGCACTGAACAATTCATTTTCTGAGGATGAGGTTCTAAGATGTGTTCATGTTGGTCTATTATGCGTAGAAGATAACGCAGATGACCGCCCCACCATGTCCAGTGTTATTTTAATGTTAGCAAACAAAACTAAAGTGAACATTTTGCCTAAAAAACCTGCATATTATGTTAGAACAAGTCTCTTGGACGAAGAAACGTTTGGTGTGGATTCTACGTATGAAAAATTTGGTTCTGAGTTACATACAGTATAG 2334 0.4079 MVCCEQWEPHVFIVIIYLLVLCTASLHVVTASNNSTLKPGDRLDVTGELCSEKGKYCMNFDPEYLRIFAQGQDDWVVWMANRDKPADIASATLSLNHSGVLKIESKNETLIILYSPPQPVNNTVATLLATGNFVLEQLHPNGNKSMLWQSFDFPTDSLLPGMKLGVNHKTRRNWSLVSSFSKSLPAPGPFRLDWEPKTKELVTRRGKQVYWRSGELRNKRFKHISAEAEYHAMFNDDEEYFMFTTPSEELTKWTLLETGQLINRKGNDIARADKCYGYNTDEGCQKWEERPTCRARGDEFDYKSGYPNLNTARNVVNVRYGISDCQAMCWSNCSCIGFASFDNINGTGCTFYQSVEGTNIAGGGEDFYLLVKSTRHKGSKWWMWMCGAMATVLLIIFHSILCHTMTKQKYVRQEKANKIRTEMQDIEASRGSTSDNDLQLNISGGDDLELFSYASIMVATNGFSLDNKLGQGGFGPVFKGILPSGQEVAVKKLSKTSGQGAIEFKNELTLISKLQHTNLVQLLGHCIHQQERMLVYEYMSNKSLDCFLFDASGRELLDWSKRFSIIEGIGQGLLYLHKYSRLKIIHRDLKASNILLDENMNPKISDFGVARMFTKQETESNTNRIVGTYGYMSPEYAMEGVFSTKSDVYSFGVLLLEIVSGRRNNSLCSEERPLNLVGHAWELWKAGLVLQVVDPALNNSFSEDEVLRCVHVGLLCVEDNADDRPTMSSVILMLANKTKVNILPKKPAYYVRTSLLDEETFGVDSTYEKFGSELHTV* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4952 777 CDD STKc_IRAK 469 734 - -
Lja3g4952 777 Pfam PAN-like domain 310 352 IPR003609 -
Lja3g4952 777 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 23 757 - -
Lja3g4952 777 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 757 - -
Lja3g4952 777 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 177 IPR036426 -
Lja3g4952 777 Gene3D Phosphorylase Kinase; domain 1 422 538 - -
Lja3g4952 777 Pfam D-mannose binding lectin 76 178 IPR001480 -
Lja3g4952 777 ProSiteProfiles PAN/Apple domain profile. 293 372 IPR003609 -
Lja3g4952 777 ProSiteProfiles Protein kinase domain profile. 463 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4952 777 Gene3D Transferase(Phosphotransferase) domain 1 539 746 - -
Lja3g4952 777 SUPERFAMILY Protein kinase-like (PK-like) 447 751 IPR011009 -
Lja3g4952 777 PIRSF SRK 265 773 IPR024171 GO:0004674
Lja3g4952 777 PIRSF SRK 6 272 IPR024171 GO:0004674
Lja3g4952 777 SMART serkin_6 463 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4952 777 Pfam Protein tyrosine and serine/threonine kinase 464 730 IPR001245 GO:0004672|GO:0006468
Lja3g4952 777 SMART blect_4 34 154 IPR001480 -
Lja3g4952 777 Gene3D - 28 151 IPR036426 -
Lja3g4952 777 ProSiteProfiles Bulb-type lectin domain profile. 28 148 IPR001480 -
Lja3g4952 777 ProSitePatterns Serine/Threonine protein kinases active-site signature. 584 596 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4952 Lja-Chr3 91700746 91704419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4952 453 753 Receptor kinase-like Gene Family AT4G23150 57.475 4.98e-120 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja3g4952 PK_Tyr_Ser-Thr 3.1e-48 CL0016