Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4951 ATGGTTTGCTGTGAAAAAATGGAACTGAAACCTCATGTTTTCATTGTTTTCACCTGCTTGTTGGTGTTGTGTACTGGTTCTCTCAATGTCATAGCCACAAATAGCACTTTGAAACAAGGAGATACATTGAATGACACGGGAAAACTATGTTCTGTAGAAGGTAAATATTGCATGGATTTTGTTGTAGGTTACCTGCGTATATATGCTGGAGGAAAAGATGGATGGTTAGTCTGGTTGGCTAACAGAAATCAACCTGTTGACCCTGGTTCTGCAACTCTATCACTGAACCACTCTGGTGTACTAAAACTAGAATCCAAAAATGAGACATCAGTAATCCTTTACTCTCCACCTCAGCCAGTGAACAACACAGTGGCCACTTTGTTAGACACAGGAAACTTTGTGCTGCAACAATTTCACCCCAATGGAACAAAGAACATGCTGTGGCAAAGTTTTGATTATCCCACTGACACTTATCTGCCTGGGATGAAGTTAGGTGTTAATCTCAAAACTGGTCATAACTGGTCACTGGTTTCGAGCTTCAGTGGTTCGATCCCAACTCCCGGTCCATTCAGGCTTGATTGGGAGCCAAAAACAAAAGAACTAGTCATTAAGAGAGGAGAACAAGTTTACTGGAGAAGTGGGGAACTGAGAGGCAGTAGATTTGAGCACATTTCCGCAGAAGCCGAGTACCAGGCTGTGTCTAACAAGGATGAAGAAGAGTACTACTTCACATTCATGAGTCCAAGTGATACAAAATGGACCCTATTAGAAACTGGTCAGCTGATAAACAGAGGAGGGAAAGGTAATGATATTGCAAGGGCTGATAATTGTTACGGTTACAACACTGATGATGGGTGCCAAAAGTGGGAGGATCAGTTACCTACCTGCAGGCGCGATGGCGATGAATTTGAGTCCAAGTCTGGTTACACCAATCCAAACATGAAAATAGATGTCGAAAACATGAGTTATGGCATAAGTGATTGTAAGGCTCTGTGCTGGAGCAACTGCACCTGCGTTGGATTCTCATCATTTGACAGTAATGGATCTGGTTGTACCTTCTATCCATCGGCCGAAGGTACTAATATTGCAGGTGGCGGAGGTACCTTCTACATGCTAGTAAACACCACCCATCACAAAGGTTCAAAATGGTGGATGTGGATGACTGGTGCAATAGCAACTGTTCTGCTCATAATCTTCCTTTCCATTTTGTGTCGAGCCATAACCAAACGAGAATATGTGCGTCAAGAAAAAAGAAAGGGAATGATGACAGAGGTGCAGGATCTCGAAACTTCTGGGGGCTTCGCTAGTGACAATGATTTAGAAAACAATTTAAACGGCGCAGATGACCTAAAAGTATTTAGCTATGCATCAATAATGGTGGCTACCAATGACTTTTCATCTGAAAACAAGTTAGGACAGGGAGGATTTGGACCTGTTTTTAAGGGAGTTATATCTTCAGGGCAAGAAGTTGCTGTGAAAAAACTTTCAAATACTTCTGGACAAGGAGTTATTGAATTCAAAAATGAATTAACACTCATATCTAAGCTTCAACATACAAATCTCGTTCAGCTAATCGGTCACTGCATTCACCAAAAAGAGCGGATGTTGGTTTATGAGTATATGCCCAACAAAAGCTTGGACTTCTTTTTATTTGATTCTTCTGGAAGAGAGTTGCTAGATTGGAACAAGCGCTTTATAATAATAGAAGGAATTGCTCAAGGACTATTATACCTTCACAAATACTCAAGACTTAGAATCATCCATAGAGATTTGAAGGCTAGTAACATACTCCTTGATGAGAATATGAACCCAAAAATTTCTGATTTCGGTGTTGCAAGAATGTTTACATTACAAGAAACTGAATCAAATACCACCAGGATTGTTGGGACATAG 1893 0.4083 MVCCEKMELKPHVFIVFTCLLVLCTGSLNVIATNSTLKQGDTLNDTGKLCSVEGKYCMDFVVGYLRIYAGGKDGWLVWLANRNQPVDPGSATLSLNHSGVLKLESKNETSVILYSPPQPVNNTVATLLDTGNFVLQQFHPNGTKNMLWQSFDYPTDTYLPGMKLGVNLKTGHNWSLVSSFSGSIPTPGPFRLDWEPKTKELVIKRGEQVYWRSGELRGSRFEHISAEAEYQAVSNKDEEEYYFTFMSPSDTKWTLLETGQLINRGGKGNDIARADNCYGYNTDDGCQKWEDQLPTCRRDGDEFESKSGYTNPNMKIDVENMSYGISDCKALCWSNCTCVGFSSFDSNGSGCTFYPSAEGTNIAGGGGTFYMLVNTTHHKGSKWWMWMTGAIATVLLIIFLSILCRAITKREYVRQEKRKGMMTEVQDLETSGGFASDNDLENNLNGADDLKVFSYASIMVATNDFSSENKLGQGGFGPVFKGVISSGQEVAVKKLSNTSGQGVIEFKNELTLISKLQHTNLVQLIGHCIHQKERMLVYEYMPNKSLDFFLFDSSGRELLDWNKRFIIIEGIAQGLLYLHKYSRLRIIHRDLKASNILLDENMNPKISDFGVARMFTLQETESNTTRIVGT* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4951 630 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 58 630 - -
Lja3g4951 630 SMART blect_4 34 154 IPR001480 -
Lja3g4951 630 Pfam PAN-like domain 296 353 IPR003609 -
Lja3g4951 630 Pfam D-mannose binding lectin 77 178 IPR001480 -
Lja3g4951 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 586 598 IPR008271 GO:0004672|GO:0006468
Lja3g4951 630 SUPERFAMILY Protein kinase-like (PK-like) 447 630 IPR011009 -
Lja3g4951 630 Gene3D Transferase(Phosphotransferase) domain 1 541 630 - -
Lja3g4951 630 Gene3D - 29 151 IPR036426 -
Lja3g4951 630 Pfam Protein kinase domain 466 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4951 630 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 179 IPR036426 -
Lja3g4951 630 ProSiteProfiles Protein kinase domain profile. 465 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4951 630 SMART serkin_6 465 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4951 630 ProSiteProfiles PAN/Apple domain profile. 296 375 IPR003609 -
Lja3g4951 630 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 58 630 - -
Lja3g4951 630 ProSiteProfiles Bulb-type lectin domain profile. 28 148 IPR001480 -
Lja3g4951 630 Gene3D Phosphorylase Kinase; domain 1 433 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4951 Lja-Chr3 91695697 91698628 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4951 389 630 Receptor kinase-like Gene Family AT4G04570 51.653 1.30e-72 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja3g4951 Pkinase 4.2e-33 CL0016