Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4948 ATGGCAAGAGTAGCTTGCTATCACCTTCACATGGTTCCCAGTTTCGTTCATCCATTGAAGTCAACACTCTTCAGAAACCACACTCTTTTCACCATACACTCTCCTCACCGTTATGGGGTTCAGCCAAGGTTCTCTTTCTCTTCTTCTTCATCGTCCAAGATAAGCATGAGCCTCAGGGCTGGTATCGTTGGTCTCCCCAACGTTGGCAAGTCCACACTCTTCAATGCTGTGGTTGAAAATGGAAAGGCTCAAGCTGCTAATTTTCCATTTTGTACAATAGAGCCAAATGTGGGGATTGTTGCTGTTCCAGATTCTCGTCTCCATGTGCTCTCTGATCTCAGTAAATCTCAGCGAGTGGTTCCAGCGTCCATAGAGTTTGTAGATATAGCTGGGCTTGTCAAGGGTGCAAGTCAAGGCGAGGGTCTGGGTAATAAGTTTTTGTCACATATTCGTGAGGTGGACTCTATACTTCAGGTTGTACGATGTTTTGATGACAATGACATTATTCATGTGAATGGGAAAGTTGACCCCAAGTCTGATATTGATGTTATCAACTTGGAGCTTGTTTTCTGTGACTTGGACCAGATTGAGAAAAGACTGGATAAACTAAAGAAGGGCAAGCCGAAGGATTCACAAAGAGTCAAGGAAGAGGCAGAAAAGTCTGCACTGGAGAAGATTCGCGTGGCACTCTTGGATGGAAAACCTGCACGATCTGTGACCTTAACTGATTCTGAAAGGGATGCTGTGAAGCACCTCTGCTTGCTCACAATGAAACCCATTATATATGTGGCAAATGTTGCAGAATCTGATCTAGCTGATCCTGCAAAAAATAATTATGTCAATGATGTCACCAATGTTGCATCTGAGCTGCAGTCAGGAATCGTAACAGTTTCAGCACAGGTTGAGGCAGAGCTAACTGAACTAGCTACGGAAGAAAGAAAAGAATATCTGAACTCTCTTGGTGTTAGTGAAAGTGGTCTTGGTAACCTAATCAGGGCAACCTATAGCCTTTTGGGGCTGCGAACTTATTTTACGTCTGGTGAGAAGGAAACAAAAGCATGGACGATACTTGCAGGAATGACGGCACCTCAAGCTGCTGGAGTGATTCACTCTGACTTCGAGAAGGGTTTCATTCGAGCAGAGACAGTGTCTTATGATGATTTTGTTGCTGCTGGTTCATTAGCTGCAGCACGAGAGAAAGGAGTTTTGAGATCTGAAGGTAAAGATTACATTGTACAAGAAGGTGATGTCATGTTGTTTCGATTCAATGTTTAG 1275 0.4376 MARVACYHLHMVPSFVHPLKSTLFRNHTLFTIHSPHRYGVQPRFSFSSSSSSKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLHVLSDLSKSQRVVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFDDNDIIHVNGKVDPKSDIDVINLELVFCDLDQIEKRLDKLKKGKPKDSQRVKEEAEKSALEKIRVALLDGKPARSVTLTDSERDAVKHLCLLTMKPIIYVANVAESDLADPAKNNYVNDVTNVASELQSGIVTVSAQVEAELTELATEERKEYLNSLGVSESGLGNLIRATYSLLGLRTYFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVSYDDFVAAGSLAAAREKGVLRSEGKDYIVQEGDVMLFRFNV* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4948 424 PANTHER OBG-LIKE ATPASE 1 56 424 - -
Lja3g4948 424 Pfam 50S ribosome-binding GTPase 60 169 IPR006073 GO:0005525
Lja3g4948 424 Hamap Ribosome-binding ATPase YchF [ychF]. 57 424 IPR004396 GO:0005524|GO:0005525|GO:0016887
Lja3g4948 424 Pfam Protein of unknown function (DUF933) 340 423 IPR013029 -
Lja3g4948 424 CDD YchF 60 338 IPR041706 -
Lja3g4948 424 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 58 339 IPR031167 GO:0005525
Lja3g4948 424 PANTHER OBG GTPASE FAMILY 56 424 - -
Lja3g4948 424 TIGRFAM TIGR00092: GTP-binding protein YchF 56 424 IPR004396 GO:0005524|GO:0005525|GO:0016887
Lja3g4948 424 SUPERFAMILY TGS-like 340 421 IPR012676 -
Lja3g4948 424 CDD TGS_YchF_OLA1 338 422 IPR013029 -
Lja3g4948 424 PRINTS GTP1/OBG GTP-binding protein family signature 60 80 IPR006073 GO:0005525
Lja3g4948 424 PRINTS GTP1/OBG GTP-binding protein family signature 82 100 IPR006073 GO:0005525
Lja3g4948 424 PRINTS GTP1/OBG GTP-binding protein family signature 126 141 IPR006073 GO:0005525
Lja3g4948 424 PRINTS GTP1/OBG GTP-binding protein family signature 143 161 IPR006073 GO:0005525
Lja3g4948 424 Gene3D - 104 423 IPR012675 -
Lja3g4948 424 Gene3D - 169 258 IPR023192 -
Lja3g4948 424 Gene3D - 58 339 IPR027417 -
Lja3g4948 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 362 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4948 Lja-Chr3 91652582 91659743 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4948 3 91652582 91659743 Lja3g4948 3 91652582 91659743 ECH