Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4946 ATGGCTATTGAGACTCACCATCTCAATCTTTTCCCTCCTCACTTCATTCCCAACCGAGAAACAATCATCACGAATCCAATCGACTCAACCTTCGTCAACATGTACAACGCGAACAACTACTCCTCCTTGCTACCACACTCCGCCACCACCACCACCGCGTCGGAAACTCTCTTCCCGGCAGCGCCGCAGTACGCTTCCTTCATCGCCGATTCGCCCGCCGCCATGAAATCTGACAGCACTCTCACCTACAACCACCACAACACCACCACCGCCACCAGCAACGGTGTCCCCTTCCAGAGAAAACGTTCCAGAGACGCCATTAACAACAACAACTACCTCTTCTCTCCTTACAAGAACACCAGCAACAACGCTTTCTCCTTCCTCGGTGAAGATATCTCCCTCCACATCCACCACCACCAACTCGACATCGATAACCTCATCTCACAACACATGGAGAAGGTGAGAATGGAATTGGAGGAGAAACGGAAAGGACAAGTGAGAAGGTTGATGGAAGCGATCGAGATCGGGATGATGAAGAGGCTGAAAACGAAGGAAGATGAGATCGAGAGAATCGGAAAACTGAATCTCGCGCTTGAAGAGAGAGTGAAATCACTCTACATCGAGAATCAGATATGGCGAGAGCTAGCACAAACAAACGAAGCCACCGCAAACGCTCTCCGCGCAAATCTGGAGCACGCGCTGTGTCAGATCAGAGATTCCGACGATGAGGACGCCACCGTTGTTCCGCCGGCAATGGCGGCGCCGGAGGATGATGCGGAATCATGCTGCGGTAGCAACAACGATGATGATGGGTGGCGCACGGTAGTGCAGCTGGGGGTGCAGGATAAGGAGTGTGGTGGGCCCGAGAGTGATAGGAGGAGGAGATTGTGCAGGAAGTGTGGGAAAGAGGAATCGTGCGTGCTTATCTTGCCTTGCAGACACCTCTGTGTTTGTACTCTTTGTGGGTCTACCCTACACAATTGTCCTATCTGTAAATCCTACAAAAATGCTAGTGTCCATGTTAACATGACTTGA 1035 0.515 MAIETHHLNLFPPHFIPNRETIITNPIDSTFVNMYNANNYSSLLPHSATTTTASETLFPAAPQYASFIADSPAAMKSDSTLTYNHHNTTTATSNGVPFQRKRSRDAINNNNYLFSPYKNTSNNAFSFLGEDISLHIHHHQLDIDNLISQHMEKVRMELEEKRKGQVRRLMEAIEIGMMKRLKTKEDEIERIGKLNLALEERVKSLYIENQIWRELAQTNEATANALRANLEHALCQIRDSDDEDATVVPPAMAAPEDDAESCCGSNNDDDGWRTVVQLGVQDKECGGPESDRRRRLCRKCGKEESCVLILPCRHLCVCTLCGSTLHNCPICKSYKNASVHVNMT* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4946 344 ProSiteProfiles Zinc finger RING-type profile. 297 332 IPR001841 -
Lja3g4946 344 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 343 IPR017066 -
Lja3g4946 344 Pfam Zinc finger, C3HC4 type (RING finger) 294 333 - -
Lja3g4946 344 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 1 343 - -
Lja3g4946 344 Coils Coil 223 243 - -
Lja3g4946 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 343 IPR013083 -
Lja3g4946 344 Coils Coil 181 201 - -
Lja3g4946 344 PIRSF SBP1_RNase_bind 1 344 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4946 Lja-Chr3 91633963 91635564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4946 291 333 Miscellaneous Gene Families AT4G39050 34.884 8.61e-06 45.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4946 3 91633963 91635564 Lja3g4946 3 91633963 91635564 ECH