Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4942 ATGGTTTTAGATAATTTCAAGAAGGATATTGATTGTGATGAATATATGGAGGATGAAGAAGTTCCACTTCCCGGGTTCCGTTTCCACCCCACAGATGAAGAACTTCTAGGTTTCTATCTTCGCCGGAAGCTTGACAACAAACCCATTACTCTCGAACTCATCAAACAGATTGATATCTACAAATATGATCCATGGGATCTTCCAAAAGCAAGTAGTAGTGGTGGAGAGAAGGAGTGGTACTTCTTTTGCAAAAGAGGGAGGAAGTATAGGAACAGCATAAGGCCCAACAGAGTCACTGGCTCTGGGTTCTGGAAAGCAACAGGGATAGACAAGCCAGTGTACTCACTCGGAGGAGAAGGCAATGACTGCATAGGACTCAAGAAAACACTGGTTTACTACCGCGGCAGCGCAGGCAAAGGCACCAAAACTGACTGGATGATGCACGAGTTTCGCCTTCCCTCCAATGCTGATCACACCAACCCCCATAACAGCAATGCTGCTGTTGCCCAAGAAGCTGAAATTTGGACATTGTGTCGAATTTTCAAGAGAAGTATGTCACACAGAAAGCAGTACACACCCGATTTGAGACAGTTAGCAGCTAAGCGTGCATCCACTGACAAGATCACCAAAATGAGAAGTTTGGAGTGTGATTACACTAATCAAGAAGCATACATAAACTTTGGTACAAACTTTGGTCATTATGCTAATGATCATAGGCATGTGATTAACAACAACACAAGCAGTGATCAAAGGCATCATCATCAGGTTCATGTAGGTCTGCTGAACTCTCCGGCGGCACAACCACCTCGATTATCGGCACCGTCTTCAGACTTCTGGAACAGCCCTGCGGCCAATGACTTCTTCACGTTTGAGAATTGGGACGAGCTTGGATCGGTTGTGAAGTTTGCTGCTGATTCGCCTATGATGTAA 930 0.4505 MVLDNFKKDIDCDEYMEDEEVPLPGFRFHPTDEELLGFYLRRKLDNKPITLELIKQIDIYKYDPWDLPKASSSGGEKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSLGGEGNDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNADHTNPHNSNAAVAQEAEIWTLCRIFKRSMSHRKQYTPDLRQLAAKRASTDKITKMRSLECDYTNQEAYINFGTNFGHYANDHRHVINNNTSSDQRHHHQVHVGLLNSPAAQPPRLSAPSSDFWNSPAANDFFTFENWDELGSVVKFAADSPMM* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4942 309 SUPERFAMILY NAC domain 19 183 IPR036093 GO:0003677|GO:0006355
Lja3g4942 309 ProSiteProfiles NAC domain profile. 22 183 IPR003441 GO:0003677|GO:0006355
Lja3g4942 309 Pfam No apical meristem (NAM) protein 24 152 IPR003441 GO:0003677|GO:0006355
Lja3g4942 309 Gene3D NAC domain 31 187 IPR036093 GO:0003677|GO:0006355
Lja3g4942 309 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 307 - -
Lja3g4942 309 PANTHER TRANSCRIPTION FACTOR JUNGBRUNNEN 1-LIKE 15 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4942 Lja-Chr3 91557381 91559576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4942 16 190 NAC Transcription Factor Family AT5G39820 56.566 6.38e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja3g4942 NAM 2.5e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4942 3 91557381 91559576 Lja3g4942 3 91557381 91559576 ECH