Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4941 ATGCAGTTGGAAGAAATGAAGAAGGGAGGGAGAAAACAAGGTGAATTGCCGTCGCCATGCGCGGCATGCAAGCTTCTTCGACGGAGATGCACCGCACAGAGCTGTGTGTTTGCTCCTTATTTTCCAGCAGATGAACCCCAAAAGTTTGCCAATGTCCACAAGGTTTTTGGGGCTAGCAATGTCAACAAAATGTTGCAGGAATTACCAGAGCACCAACGAGGCGATGCGGTTAGGTCAATGGTATATGAAGCCAATGCAAGGGTGAGGAACCCAGTGTACGGATGTGTGGGAGCGATATCATCTCTGCAGCAACAGGTTGATGTGTTACATACCCAATTGGCACTTGCACAAGCAGAGGTTGTGCATTTGAGAATGCACCAAGTCTCATCTTCTCGTGATGATGATCAGTACAAACATGTTGTTCATGCAACCTCAAATTCATCATCAGAAAACTTATCATCCCCATCGAGAAGGCTCATCATGTCTTCACAGAGCAAGTCCCCTTTTTCCATTGACATGGATATTGATCAAGTAGAAATAGGGGAGTCCTTGTGGTCATGCTAG 564 0.4628 MQLEEMKKGGRKQGELPSPCAACKLLRRRCTAQSCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPEHQRGDAVRSMVYEANARVRNPVYGCVGAISSLQQQVDVLHTQLALAQAEVVHLRMHQVSSSRDDDQYKHVVHATSNSSSENLSSPSRRLIMSSQSKSPFSIDMDIDQVEIGESLWSC* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4941 187 ProSiteProfiles LOB domain profile. 18 120 IPR004883 -
Lja3g4941 187 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 163 - -
Lja3g4941 187 Pfam Lateral organ boundaries (LOB) domain 19 117 IPR004883 -
Lja3g4941 187 Coils Coil 99 119 - -
Lja3g4941 187 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 6 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4941 Lja-Chr3 91522200 91527838 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4941 6 187 AS2 family AT1G31320 66.667 4.76e-68 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja3g4941 LOB 3.3e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4941 3 91522200 91527838 Lja3g4941 3 91522200 91527838 ECH