LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g4923	ATGACCTGTTTTTCTTTCTTACGTAGTAGGAAAGTGCCTCCTCTAGCAAGTACAAATCCTGACATTGATAAAGAAATTTCGGGCATCCATGTAAGAGTGTTCACCTACAAAGAACTAAAAATTGCCACTGACAATTTCAGCCCGGTTAATAAAATCGGTGAGGGTGGTTTTGGTCCTGTCTATAAGGGAGTGCTAAAGGATGGGAAAGTAGGTGCTATAAAAGTTCTTTCAGCTGAATCAAAGCAAGGGGTGAAGGAATTCATGACAGAGATTAATGTGATATCAGAAATAGAGCATGAAAATTTGGTTCAACTATATGGTTGTTGTGTGGAAGGAAATCACCGAATATTAGTCTACAATTACCATGAGAACAATAGCCTTGCACAAACGCTTCTAGGTGGAGGTCACAGTAATATCCACTTCGATTGGCGAACGCGATCTAGGATATGCATTGGGGTTGCACGTGGACTTTCCTTTCTTCATGAGGAAGTACGACCGCATATTGTTCACAGAGATATAAAAGCCAGCAATATCCTCCTTGACAAGGACCTTACTCCTAAGATTTCAGATTTTGGTCTTGCAAAACTTATTCCAGCATATATGACTCATGTCAGCACACGTGTAGCAGGAACAATAGGTTATTTGGCACCAGAGTATGCAGTAAGGGGGCAGCTGACACGTAAAGCAGATATTTACAGTTTTGGTGTCCTCCTTGTGGAGATAGTCAGTGGGAGATGCAACACAAATTCACTATTACCAATAGGAGATCAATATATTCTAGAAAAGGCCTGGGATCTTTATCAGCAAAACGAATTGGTAATGCTAGTAGACATATCACTAAACGGGGCATTCGATCCTGAGGAGGCTTGCCGAATTCTGAAAATTGCGCTACTTTGCACTCAGGATAATCCGAAACTCCGGCCATCCATGCCTTCTGTGGTCAAGATGCTCGCCGGAGAAATGGATGTTGATGAAAGTAAGATAACAAAACCAGGCTTGATTTCAGATGTTATGGACCTTAAAATTAGACAACCGAAGGGTAATAAAGATACCAAGACTTCATCTTCATTCAATAGTTCCTCTGCATCAGACAGCCAGGGCACTATGAAGTCATTAGCTGCTTCAAGTGCTGCATCTACCTTCACTGTAAAATATGATAAAAGCATGTAA	1170	0.4111	MTCFSFLRSRKVPPLASTNPDIDKEISGIHVRVFTYKELKIATDNFSPVNKIGEGGFGPVYKGVLKDGKVGAIKVLSAESKQGVKEFMTEINVISEIEHENLVQLYGCCVEGNHRILVYNYHENNSLAQTLLGGGHSNIHFDWRTRSRICIGVARGLSFLHEEVRPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPAYMTHVSTRVAGTIGYLAPEYAVRGQLTRKADIYSFGVLLVEIVSGRCNTNSLLPIGDQYILEKAWDLYQQNELVMLVDISLNGAFDPEEACRILKIALLCTQDNPKLRPSMPSVVKMLAGEMDVDESKITKPGLISDVMDLKIRQPKGNKDTKTSSSFNSSSASDSQGTMKSLAASSAASTFTVKYDKSM*	390

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g4923	389	Pfam	Protein kinase domain	49	315	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja3g4923	389	Gene3D	Transferase(Phosphotransferase) domain 1	123	331	-	-
	Lja3g4923	389	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	168	180	IPR008271	GO:0004672\|GO:0006468
	Lja3g4923	389	MobiDBLite	consensus disorder prediction	349	389	-	-
	Lja3g4923	389	PANTHER	-	2	373	-	-
	Lja3g4923	389	Gene3D	Phosphorylase Kinase; domain 1	17	121	-	-
	Lja3g4923	389	MobiDBLite	consensus disorder prediction	344	389	-	-
	Lja3g4923	389	CDD	STKc_IRAK	52	317	-	-
	Lja3g4923	389	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	2	373	-	-
	Lja3g4923	389	ProSiteProfiles	Protein kinase domain profile.	46	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja3g4923	389	SMART	serkin_6	46	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja3g4923	389	SUPERFAMILY	Protein kinase-like (PK-like)	25	317	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g4923	Lja-Chr3	91270479	91273061	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g4923	21	323	Receptor kinase-like Gene Family	AT1G53430	58.033	1.11e-115	358

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lja3g4923		Pkinase	7.8e-46	CL0016