Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4922 ATGGCAGTGGAAGAACACGGTTCAAGTTCCTCTGATTCTTGGATCGTGCGCATGTTGCAGTGCAGGATCTGTAGTTCGACGCGCCAGCGTTTAGAAGGATTCAACGACATGGAGATTCTTGCGAAGCTCGGCCAAGGCGCGTTCGGAAAAGTCTTCCGCTGCCGCGATCGGAAAACTGGCCGCCTCGTCGCCGTGAAACAAATCGAGATTCCGCCAGGCCTTACTATGATCACGCGTTCCATCAAAATGACCAGAGAAATGGATCTTCTAAAGAAAGTACTCGATCATGACAACATTGTGAGGTTGCTGTATCATGTGGTTACCGAGGATAAGAAATATTTGTATCTCGTGTTTGAGCATCTGGACTGTGATCTTCATCAGTACATTAGAGAACATAGTCACACTGTAGATCCAGCGATTAGAAAGAATTTTCTGCGTCAAATACTCACTGGAGTGGCGTACTGTCATGCGAATCAGATTCTCCACAGAGATTTGAAGCTAAAGAATCTGCTGATGGATCGATCTAAGAACATAATCAAGCTAGCTGATTTTGGCCTGGCTAGAGCATTGGGAGATCCTGCTCAGCATAGTCAAAATTTGGGAACTCGGTGGTATAGGGCTCCTGAACTTTTGTTTGGCCTTCCATATTCAACCCCAGTTGATTTGTGGTCTGTGGGGTGTATATTTGGTGAGATGGTTATTGGAAATCCAATATTCAAAGCTCTTCATTTTGTCGATGATGAATTAGAGGCGATATTCAGAGTGTTAGGTACCCCAACAGAGGAAACCTGGCCAGGAGTTACTAGCTTTAATGACTTTCAGAACATCCGCCAATATAAACCATTGGACCTGGAGACAATTTTTGCTGATCTTGGCACAGCTGGCCTTGATCTTCTCACTAGTATGCTTTGCCTGGACCCAAGTAAACGAATTTCTGCTGAGGCTGCTCTGGAACATGCTTACTTTAATGATTGA 975 0.4492 MAVEEHGSSSSDSWIVRMLQCRICSSTRQRLEGFNDMEILAKLGQGAFGKVFRCRDRKTGRLVAVKQIEIPPGLTMITRSIKMTREMDLLKKVLDHDNIVRLLYHVVTEDKKYLYLVFEHLDCDLHQYIREHSHTVDPAIRKNFLRQILTGVAYCHANQILHRDLKLKNLLMDRSKNIIKLADFGLARALGDPAQHSQNLGTRWYRAPELLFGLPYSTPVDLWSVGCIFGEMVIGNPIFKALHFVDDELEAIFRVLGTPTEETWPGVTSFNDFQNIRQYKPLDLETIFADLGTAGLDLLTSMLCLDPSKRISAEAALEHAYFND* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4922 324 ProSiteProfiles Protein kinase domain profile. 37 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4922 324 ProSitePatterns Protein kinases ATP-binding region signature. 43 66 IPR017441 GO:0005524
Lja3g4922 324 PANTHER CELL DIVISION PROTEIN KINASE 32 324 - -
Lja3g4922 324 SUPERFAMILY Protein kinase-like (PK-like) 35 324 IPR011009 -
Lja3g4922 324 Gene3D Transferase(Phosphotransferase) domain 1 123 324 - -
Lja3g4922 324 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Lja3g4922 324 Pfam Protein kinase domain 38 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4922 324 Gene3D Phosphorylase Kinase; domain 1 34 122 - -
Lja3g4922 324 PANTHER CYCLIN-DEPENDENT KINASE 32 324 - -
Lja3g4922 324 SMART serkin_6 37 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4922 Lja-Chr3 91264130 91268507 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4922 35 324 Core Cell Cycle Gene Families AT3G48750 46.939 5.81e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Lja3g4922 Pkinase 1.2e-69 CL0016