Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja3g4901 | ATGAGAAGAATCCCCTTTCCCCTACTGAAACGACCTCCGATCGCACTGACCCACCGAACTCAACCTCCACACCGCCACAATGCCGCCGCCGCACCACCACCACCACCACCGTTCAGATCCCTATCCACAACCTCTCTCCCCCTCCCTCCCCCGGAGCTCGTCGAGCCATTCTGCGACCTCTCCGACGTCGCCGTCTCCTCCTCGCAACCCTCCCCATGGCTCACCCAAATCCTCAACCTCCTCGACGGCTCCCCCTCCATGGAATCCAACCTCGACTCCTTCTGCCGCCGCTTCCTCATCGCCCTCTCCCCCGCCTTCGTCGCCCACACCCTCCGCTCTCTCACCGACCCCCACACTGCCCTCCGCTTCTTCACCTGGGCCTCCACACACCACCGCCAATACTCCCACACTCTCGACTGCTACGTCTCCCTCATCAACCTCCTCCTCCTCCTCTCCTCCGCCGACCCCGCCGTAATCGCCTCATTCCGAACCGTCTTCGCTGACCTGAAACGCCGCCAGCTCCCGCTCACCGCCCGCGCTGCGAATTCCCTAATCAAGAGCCTCGGCGGCGCTGGCCTGGTGGAGGAGCTGCTGTGGGTGTGGCGCGGGATGAACGAGCACGGCATTGAGCCCGGTCTCTACGCCTACAACTCGCTCCTCAATGGCCTGGTCGGTTCCTCAATGGTGGAGTCCGCGGAGCGGGTTTTCGAGGCGATGAAGGAAGGAAGAACGAAGCCTGATGTGGTCACCTACAACACCTTGATCAAGGGGTTCTGTAAAATTGGGAAAACGCACAGGGCGTTCGAGGTGGTTCGGGAGATGGAGGGTGAGGACATTGGCCCTGATGTGGTTACTTACATGACCCTGATGCAGGCTTGTTACTCCCATGGGGATGTGGATTGTTGTTTGAGCCTCTACCATGAGATGGAAGATAGAGGGTTAGAGGTTCCGCCGCACGCGTTTAGTTTAGTGATTTGCGGGCTGTGTCGGCAGGGGAAGGTTGCTGAGGGATACGCCGCGTTTGAGAGTATGGTTAGGAGAGGTGTTGAGGCCAACAAGGTAGTGTACACTGCTCTCATTGATTGTTATGGCAAGAGTGGGAACTCTGATGGGGCTGTGAGGTTGTTTGAGAGGATGAAGATGGAGGGGATCGAGCCGGATGAGGTTACGTATGGTGCTCTTGTTAATGGGTTGTGCAAGAGTGGGAGAGTGGAGGAAGCTTTGGGTTACTTCAGGTTTTGTGATGAGAATGGGATTGGTGTTAATGCGGTTTTGTATTCGAGTTTGATTGATGGACTTGGGAAGGCTGGGAGGGTGGATGAAGCTGAGAAGCTGTTTGATAAAATGCGTGAGAAGGGGTGTCCGCGGGATTCATATTGCTACAATGTTCTCATTGATGGGTTGTGCAAGTGTGGAAGGATTGATGAGGCTCTTGTTCTGTATGAGCGGATGGAACAAGAAGGTTGCGAACAAACGGTTTATACTTACACGATACTCATCAGTGAGCTGTTTAAGGAGCACAGGAATGAAGAGGCTTTGAAGATGTGGGAGGTGATGATTGACAAAGGTATCACTCCAAATGTTGCCTGTTTCAGGGCTCTTTCCATTGGGTTATGTCTTTCGGGGAAGGTTGCGAGGGCTTGCAAGGTGTTGGATGAGCTCGCCCCCATGGGTTTTGTTGTTGAAAACGCGTATGAGGACATGATTATTGCGCTGTGCAAAGCCGGTCGCGTTAAGGAGGCCTGCAAGTTGGCTGATGGGGTTGTGGGTAGGGGTAGGGAGATACCTGGGAAGATTCGGACTGTGATGATTAATGCCTTGAGGAAAGCTGGGAATGCAGATTTGGCTATCAAATTGATGCATAGCAAGATTGGTATTGGGTATGACCGATATAGGAGTGTTAAAAAGCGGGTGAAAAATGTTTCAAGGGGTTGGAATTTAGTCAGCTGGAAGAAAGTGACCTTGCCTAAGAGTTCTGGTGGTGGTGGACCAATGTTGCCTGAGAGAGAGGAAAGTGAAGTTTGA | 2025 | 0.5388 | MRRIPFPLLKRPPIALTHRTQPPHRHNAAAAPPPPPPFRSLSTTSLPLPPPELVEPFCDLSDVAVSSSQPSPWLTQILNLLDGSPSMESNLDSFCRRFLIALSPAFVAHTLRSLTDPHTALRFFTWASTHHRQYSHTLDCYVSLINLLLLLSSADPAVIASFRTVFADLKRRQLPLTARAANSLIKSLGGAGLVEELLWVWRGMNEHGIEPGLYAYNSLLNGLVGSSMVESAERVFEAMKEGRTKPDVVTYNTLIKGFCKIGKTHRAFEVVREMEGEDIGPDVVTYMTLMQACYSHGDVDCCLSLYHEMEDRGLEVPPHAFSLVICGLCRQGKVAEGYAAFESMVRRGVEANKVVYTALIDCYGKSGNSDGAVRLFERMKMEGIEPDEVTYGALVNGLCKSGRVEEALGYFRFCDENGIGVNAVLYSSLIDGLGKAGRVDEAEKLFDKMREKGCPRDSYCYNVLIDGLCKCGRIDEALVLYERMEQEGCEQTVYTYTILISELFKEHRNEEALKMWEVMIDKGITPNVACFRALSIGLCLSGKVARACKVLDELAPMGFVVENAYEDMIIALCKAGRVKEACKLADGVVGRGREIPGKIRTVMINALRKAGNADLAIKLMHSKIGIGYDRYRSVKKRVKNVSRGWNLVSWKKVTLPKSSGGGGPMLPEREESEV* | 675 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja3g4901 | 674 | MobiDBLite | consensus disorder prediction | 27 | 45 | - | - | |
| Lja3g4901 | 674 | Gene3D | Tetratricopeptide repeat domain | 75 | 228 | IPR011990 | GO:0005515 | |
| Lja3g4901 | 674 | Gene3D | Tetratricopeptide repeat domain | 561 | 631 | IPR011990 | GO:0005515 | |
| Lja3g4901 | 674 | SUPERFAMILY | HCP-like | 329 | 494 | - | - | |
| Lja3g4901 | 674 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 282 | 316 | IPR002885 | - | |
| Lja3g4901 | 674 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 177 | 211 | IPR002885 | - | |
| Lja3g4901 | 674 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 352 | 386 | IPR002885 | - | |
| Lja3g4901 | 674 | MobiDBLite | consensus disorder prediction | 15 | 45 | - | - | |
| Lja3g4901 | 674 | Gene3D | Tetratricopeptide repeat domain | 343 | 412 | IPR011990 | GO:0005515 | |
| Lja3g4901 | 674 | Gene3D | Tetratricopeptide repeat domain | 485 | 557 | IPR011990 | GO:0005515 | |
| Lja3g4901 | 674 | Gene3D | Tetratricopeptide repeat domain | 413 | 484 | IPR011990 | GO:0005515 | |
| Lja3g4901 | 674 | Pfam | PPR repeat | 245 | 275 | IPR002885 | - | |
| Lja3g4901 | 674 | Pfam | PPR repeat | 488 | 519 | IPR002885 | - | |
| Lja3g4901 | 674 | Gene3D | Tetratricopeptide repeat domain | 229 | 342 | IPR011990 | GO:0005515 | |
| Lja3g4901 | 674 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 212 | 246 | IPR002885 | - | |
| Lja3g4901 | 674 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL | 42 | 639 | - | - | |
| Lja3g4901 | 674 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 247 | 281 | IPR002885 | - | |
| Lja3g4901 | 674 | Pfam | PPR repeat | 568 | 584 | IPR002885 | - | |
| Lja3g4901 | 674 | Pfam | PPR repeat | 215 | 241 | IPR002885 | - | |
| Lja3g4901 | 674 | Pfam | PPR repeat | 182 | 209 | IPR002885 | - | |
| Lja3g4901 | 674 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL | 42 | 639 | - | - | |
| Lja3g4901 | 674 | Pfam | PPR repeat family | 422 | 470 | IPR002885 | - | |
| Lja3g4901 | 674 | Pfam | PPR repeat family | 352 | 400 | IPR002885 | - | |
| Lja3g4901 | 674 | Pfam | PPR repeat family | 281 | 330 | IPR002885 | - | |
| Lja3g4901 | 674 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 387 | 421 | IPR002885 | - | |
| Lja3g4901 | 674 | TIGRFAM | PPR: pentatricopeptide repeat domain | 320 | 352 | IPR002885 | - | |
| Lja3g4901 | 674 | TIGRFAM | PPR: pentatricopeptide repeat domain | 389 | 412 | IPR002885 | - | |
| Lja3g4901 | 674 | TIGRFAM | PPR: pentatricopeptide repeat domain | 284 | 315 | IPR002885 | - | |
| Lja3g4901 | 674 | TIGRFAM | PPR: pentatricopeptide repeat domain | 424 | 457 | IPR002885 | - | |
| Lja3g4901 | 674 | TIGRFAM | PPR: pentatricopeptide repeat domain | 459 | 490 | IPR002885 | - | |
| Lja3g4901 | 674 | TIGRFAM | PPR: pentatricopeptide repeat domain | 214 | 248 | IPR002885 | - | |
| Lja3g4901 | 674 | TIGRFAM | PPR: pentatricopeptide repeat domain | 354 | 388 | IPR002885 | - | |
| Lja3g4901 | 674 | TIGRFAM | PPR: pentatricopeptide repeat domain | 494 | 528 | IPR002885 | - | |
| Lja3g4901 | 674 | TIGRFAM | PPR: pentatricopeptide repeat domain | 249 | 283 | IPR002885 | - | |
| Lja3g4901 | 674 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 492 | 526 | IPR002885 | - | |
| Lja3g4901 | 674 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 457 | 491 | IPR002885 | - | |
| Lja3g4901 | 674 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 422 | 456 | IPR002885 | - | |
| Lja3g4901 | 674 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 317 | 351 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja3g4901 | 77 | 628 | Glycosyltransferase | AT1G05670 | 26.510 | 1.85e-49 | 182 |