Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4894 ATGTGGTTTGGTTCCAAACCCCTCTATGTTCTTATCTTCATGTTTCTGGCTTTGAATTGCTTTCAAGACTTCAGATCCAACGCTCAACTCATTCCTGAAAATGAAGTGAAAACTCTGCAGGCAATATCGGATAAACTAAAGAACTTGAATTGGAAAGTCACAGAAAGTTCCTGCACAGAGGATGGAGGCTTTAATGGAAAGGTGCAAATAGGAGAAAACTTGGAGAGGAATGTCACATGCAATTGCACTTTCCAAAAGAACACTACTTGCCATGTTACAAGCATATTGCTCAAGGGTCAGAATATATCTGGAGTTATGCCAAGTGAATTTGCAAATCTCACCCAACTGCAAGAGCTTGATCTCTCTCGCAACTATCTCAATGGCTCAATTCCAACGAGTTTTGCTCGCAGCTCGGTGGTCATTTTGGGTCTTCTTGGAAACCGATTAAGTGGTCAAATTCCGCCAGAAATTGGTGATATGGCTAGCTTGGAGGAACTGATCCTAGAAAATAATCAACTCACAGGACCACTTCCTCCTAGTCTTGGAAATTTGGCCAACTTGAAGAGACTGCTTCTTTCTTCAAATAACTTTACAGGGACAATACCAGAAACATTGGGCAAACTGAAGAATCTCACTAATTTTAGGATAGATGGAAGCAGCTTATCAGGACAGATACCTAGTTTTATAGGAAACTGGACCAACCTTGAAAGATTGGATCTGCAAGGAACAGGTTTGAAAGGCCCAATTCCTCCCTCTATATCTGAGTTGAAACTTTTGAAACAACTGAGAATAACTGATTTGACTGGACCAACTATGACGTTTCCAGATCTGAAGGATGCCACAAAAATGGCACGACTGGAATTGAGAAATTGCCTAATCACTGGTCCCATTCCAGATTACATTGGTGAGATGAAAAAATTGAAAACTTTAGACCTCAGCTTCAATAGGTTGACTGGTCCAATCCCTGATTCAATTCAGGAATTGGAGGAACTAGATTACATGTTTCTGACTAATAATTCTTTGAGCGGACCAATTCAAGACTGGATAATGAACTTCAAAAAAAACATGGATTTATCTTACAACAATTTTACAAAGTCTTCTGCAACTACCTGCCAGCAATTGAATGTGAACTTGGCTTCAAGCCATTCTTCTTCAGCGGTTACTTCACCTTCAACCTTTTGTTTGAAGAGAAACCTACCTTGTGCTGGAAAACCCAAGTATCATACAATGTTCATAAACTGCGGAGGACCTGAAGGAGAGTTTGAGGGAAATGACTATGTAGGAGATCTCCAGAAAGCTGGCATTTCAAACTTTGATTTAGGAAATGAAGGACTATGGGCTTATAGCAGCACAGGAGTGTATCTGGGAAATGATAATGCAGAATTTACAGCGAGCAATACATTTTCTTTGAATGTTAGTAGCCCAGCGTACTATCAAACTGCACGTCTTGCCCCTCTGTCACTCAACTACTATGGTTTTTGTATGCTGAAGGGAAATTATAAAGTGAAGCTCCATTTTGCTGAGATTATGTTTTCTAATGACCAGACTTTTAGCAGTCTCGGAAGGCGCATATTTGATGTTTCAATTCAAGGTTTTAAATACTTGAAAGATTTTAACATTATGGAAAAAGCTGGTGGAGTTGGAAAGGGAATCACTGAAGAATTCAACGTCGATGTTAATGATAGTACCTTGGAAATCCACTTATACTGGGCAGGGAAAGGAACTACTGCCATTCCTGATAGAGGTGTATATGGACCACTTATATCTGCTATCTCAGTAACACCAAACTTCAAAATTCCTTCTGAAGGAGGGCTTTCTGGTGGAGCTATTGCTGGAATTGTGATTGGATTATGTGTGTTTGTCATACTGATACTTGGTGTACTTTGGAAGATGGGTTTCATTTTCAAGAAAGACACAACAGATAAAGACCTTCTAGATCTGAAAACAGGTTATTTCAGCTTAAGACAAATTAAAGCAGCCACTAATAACTTTGACCCTGCAAACAAGATAGGTGAAGGAGGGTTTGGACCAGTATACAAGGGTGTGCTGTCAGAGGGTGATGTGATTGCTGTTAAACAGCTCTCCTCCAAATCAAAGCAAGGGAACCGCGAATTCATCAATGAAATTGGGATGATATCTGCTTTGCAGCACCCAAATCTTGTGAAGCTTTATGGCTGTTGCATTGAAGGAAACCAGTTGCTGCTGGTATATGAATACATGGAGAACAACAGTCTTGCCCGCGCACTTTTCGGTAATGAAGAACAGAAGCTGAATTTGAACTGGCGTACAAGGATGAAGATCTGTGTGGGAATAGCAAAGGGATTAGCTTATCTTCATGAGGAATCAAGATTGAAAATAGTTCACAGGGATATTAAGGCAACCAATGTCTTACTTGACAAGGATCTGAAAGCCAAGATCTCTGACTTTGGGTTAGCCAAGCTTGATGAAGAAGAAAATACTCATATCAGTACTCGGATAGCTGGAACAATTGGTTACATGGCTCCAGAATATGCTATGCGGGGATACTTAACTGATAAAGCAGATGTATACAGCTTTGGGATTGTGGCTTTAGAGATTGTTAGTGGAAAAAGCAATACAAATTACAGGCCAAAGGAGGAGTTTATATATCTTCTTGATTGGGCCTATGTTCTCCAAGAGCAAGGAAACCTTCTGGAACTGGTGGATCCAGGTCTTGGTTCAAAGTACTCCCAAGAGGAGGCAATGAGAATGCTGAGCTTGGCACTCTTATGCACCAATCCATCTCCAACTCTCAGACCACCCATGTCATCTGTAGTGAGCATGCTCGAAGGAAAGATCCCGATCCAAGCGCCGATTATCAAGCGCAGCAATGACAGCGACCAACAGGCAAGATTTAAAGCCTTTGAGCTGATATCACAAGACAGCCAAACTCTTTATTCGATGTCGCAGGCGAGTACTGAGCAAAGACACATATCAAGTGATGGACCATGGGTTGACTCCTCTATATCTCTTCAAAGTGGAGAGCATGAAACTTCATCCAGTAAGCTTCTTTGA 3033 0.4092 MWFGSKPLYVLIFMFLALNCFQDFRSNAQLIPENEVKTLQAISDKLKNLNWKVTESSCTEDGGFNGKVQIGENLERNVTCNCTFQKNTTCHVTSILLKGQNISGVMPSEFANLTQLQELDLSRNYLNGSIPTSFARSSVVILGLLGNRLSGQIPPEIGDMASLEELILENNQLTGPLPPSLGNLANLKRLLLSSNNFTGTIPETLGKLKNLTNFRIDGSSLSGQIPSFIGNWTNLERLDLQGTGLKGPIPPSISELKLLKQLRITDLTGPTMTFPDLKDATKMARLELRNCLITGPIPDYIGEMKKLKTLDLSFNRLTGPIPDSIQELEELDYMFLTNNSLSGPIQDWIMNFKKNMDLSYNNFTKSSATTCQQLNVNLASSHSSSAVTSPSTFCLKRNLPCAGKPKYHTMFINCGGPEGEFEGNDYVGDLQKAGISNFDLGNEGLWAYSSTGVYLGNDNAEFTASNTFSLNVSSPAYYQTARLAPLSLNYYGFCMLKGNYKVKLHFAEIMFSNDQTFSSLGRRIFDVSIQGFKYLKDFNIMEKAGGVGKGITEEFNVDVNDSTLEIHLYWAGKGTTAIPDRGVYGPLISAISVTPNFKIPSEGGLSGGAIAGIVIGLCVFVILILGVLWKMGFIFKKDTTDKDLLDLKTGYFSLRQIKAATNNFDPANKIGEGGFGPVYKGVLSEGDVIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLVYEYMENNSLARALFGNEEQKLNLNWRTRMKICVGIAKGLAYLHEESRLKIVHRDIKATNVLLDKDLKAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFIYLLDWAYVLQEQGNLLELVDPGLGSKYSQEEAMRMLSLALLCTNPSPTLRPPMSSVVSMLEGKIPIQAPIIKRSNDSDQQARFKAFELISQDSQTLYSMSQASTEQRHISSDGPWVDSSISLQSGEHETSSSKLL* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4894 1010 Gene3D - 408 596 - -
Lja3g4894 1010 Gene3D Ribonuclease Inhibitor 35 201 IPR032675 -
Lja3g4894 1010 Gene3D Ribonuclease Inhibitor 202 269 IPR032675 -
Lja3g4894 1010 SUPERFAMILY L domain-like 85 364 - -
Lja3g4894 1010 ProSiteProfiles Protein kinase domain profile. 664 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4894 1010 Pfam Leucine Rich Repeat 115 134 IPR001611 GO:0005515
Lja3g4894 1010 Pfam Leucine Rich Repeat 162 184 IPR001611 GO:0005515
Lja3g4894 1010 Gene3D Phosphorylase Kinase; domain 1 631 739 - -
Lja3g4894 1010 MobiDBLite consensus disorder prediction 974 1010 - -
Lja3g4894 1010 Gene3D Transferase(Phosphotransferase) domain 1 740 958 - -
Lja3g4894 1010 PANTHER - 70 996 - -
Lja3g4894 1010 Gene3D Ribonuclease Inhibitor 270 392 IPR032675 -
Lja3g4894 1010 SMART serkin_6 664 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4894 1010 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 70 996 - -
Lja3g4894 1010 SMART LRR_typ_2 113 136 IPR003591 -
Lja3g4894 1010 SMART LRR_typ_2 184 208 IPR003591 -
Lja3g4894 1010 SMART LRR_typ_2 160 183 IPR003591 -
Lja3g4894 1010 SMART LRR_typ_2 304 328 IPR003591 -
Lja3g4894 1010 Pfam Leucine rich repeat 283 341 IPR001611 GO:0005515
Lja3g4894 1010 CDD STKc_IRAK 670 937 - -
Lja3g4894 1010 Pfam Protein tyrosine and serine/threonine kinase 668 934 IPR001245 GO:0004672|GO:0006468
Lja3g4894 1010 SUPERFAMILY Protein kinase-like (PK-like) 648 936 IPR011009 -
Lja3g4894 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 786 798 IPR008271 GO:0004672|GO:0006468
Lja3g4894 1010 Pfam Malectin domain 410 591 IPR021720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4894 Lja-Chr3 90969662 90980649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4894 6 996 Receptor kinase-like Gene Family AT1G53440 62.911 0.0 1248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja3g4894 PK_Tyr_Ser-Thr 4.5e-51 CL0016