Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4817 ATGGCAATTTGCTCTTCACCTTCATCATCTTCATCTTCTTCGTCGTTTGATTCTTCAAACAACACGAAGGCATGGATTGTCCATGGAATTCTGGCCGGGGGCGCAATTGCAGCAGCTGCCGGCGCTCACGTTTACATGACCCGCTTCCGCAAATTCCGGAGCCGGGTCGTCGGCGTCATACCCGCCCGGTTCGCCTCCTCTCGGTTCCAGGGCAAGCCATTGGTTCAAATCCTTGGCAAGCCCATGATTCAGAGAACATGGGAAAGGGCAAAGCTGGCAGCTACATTGGATCATGTTGTTGTGGCAACTGATGATGAAAGGATTGCTGACTGCTGTCGACAATTCGGGGCTGATGTCATAATGACAGCAGAATCTTGCCGAAATGGTGCTGAGCGTTGCAATGAAGCTGTACAGAAGCTTAGGAAAAAGTATGATATTGTGGTGAACATTCAAGGGGATGAACCACTTATTGAACCTGAAATAATAGATGGTATAGTCCAAGCTTTGCAGGCAGCTCCAGATGCAGTTTTCAGCACTGCAGTCACGTCTTTAAAGCCCGAAGATGCAAATGATCCAAACAGGGTGAAATGCGTGGTCGACAATCGTGGCTATGCGATCTATTTTTCACGAGGGTTAATCCCATTCAACAAGTCTGGGAAGGTCAATCAACAATTCCCTTATTTGCTTCATCTTGGGATTCAGAGCTATGATGCAAAGTTTCTAAAGATTTACTCAGACCTTCAACCTACCCCATTGCAACTCGAGGAGGACTTGGAGCAGCTTAAGGTCCTTGAGAACGGCTATAAGATGAAGGTAATAAAAGTTGACCACGATGCCCATGGTGTTGACACTCCTGAAGATGTTGAAAAGCTAGAATCTCTAATGCGCGAGAGGAACTTGTCTTGA 906 0.4702 MAICSSPSSSSSSSSFDSSNNTKAWIVHGILAGGAIAAAAGAHVYMTRFRKFRSRVVGVIPARFASSRFQGKPLVQILGKPMIQRTWERAKLAATLDHVVVATDDERIADCCRQFGADVIMTAESCRNGAERCNEAVQKLRKKYDIVVNIQGDEPLIEPEIIDGIVQALQAAPDAVFSTAVTSLKPEDANDPNRVKCVVDNRGYAIYFSRGLIPFNKSGKVNQQFPYLLHLGIQSYDAKFLKIYSDLQPTPLQLEEDLEQLKVLENGYKMKVIKVDHDAHGVDTPEDVEKLESLMRERNLS* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4817 301 CDD CMP-KDO-Synthetase 55 294 IPR004528 GO:0008690
Lja3g4817 301 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 44 296 IPR029044 -
Lja3g4817 301 Pfam Cytidylyltransferase 58 268 IPR003329 -
Lja3g4817 301 TIGRFAM kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 59 289 IPR004528 GO:0008690
Lja3g4817 301 PANTHER 3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE 6 301 - -
Lja3g4817 301 PANTHER 3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE, MITOCHONDRIAL-LIKE 6 301 - -
Lja3g4817 301 SUPERFAMILY Nucleotide-diphospho-sugar transferases 56 298 IPR029044 -
Lja3g4817 301 Hamap 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 54 296 IPR004528 GO:0008690
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4817 Lja-Chr3 90228445 90231907 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4817 3 90228445 90231907 Lja3g4817 3 90228445 90231907 ECH