Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4743 ATGGAGAGAGAGTTTGAATTTGAACAACGAGGGTTCATAAAGAAAGGACCATGGAGCAGTGAAGAAGATGAGATTCTGCTGAAGCATGTAAGCAAGTATGGTCCAAGGGAATGGAGCTCCATTCGATCCAAAGGCTTGTTGCCCAGAACTGGAAAATCTTGTCGCCTCAGATGGGTTAACAAGCTTAGACCCAACTTAAAAGCTGGCTGCAAGTTTTCAGTGGAGGAGGAAAGGGTGGTTATTGAATTGCAGGCAGAGTTTGGGAACAAGTGGGCGAAAATCGCTACGTATTTGCCTGGGAGAACTGACAATGATGTAAAGAATTTCTGGAGCAGCAGGAGGAAGAGGTTGGAGAGGACTTTGCACCAGAGGCCACCACTGTCAAAGTTGCAGAAACACAAAGGAAAAGCACCTCTTAGTCAAGTAAAAGTTGAAGAGGTTCATGCATGCAGTTCCAATCAGGTGGATAACCTTTCTTGCCATCCTTCCTATATGGGAAATACAGAGGTGTTTCAGATGGTAAACCTGCAAGATTTGACAAAGCCAAACTATCAACACTTTGAAGCTAACCTTCATGCAGTTGAGGTTGAGGCTACTCCACTTCACACTGTTCCATCGTTTGAGTCTTCAACAGAGTACAACTTTCCTCTTCTCCCTGAATCACAAATGGACTTTCCCCTATTCCCAGTTTGCCAGGATCTTGTTCCAGAGCCCTTCGACCCTAATTTCATCGATATGTTCGAACAGAAGAAGGTTGCGACCAGGTTGCCAAGTCTCGGACTGGATGGAAATTGTAGAAGTACAAGTTCAAACTGCTTTAAGGACTTCCCAACTGAGATTTTTGAATACTTTGAGCATATTCCAACCTCACCAGAACAATAA 882 0.441 MEREFEFEQRGFIKKGPWSSEEDEILLKHVSKYGPREWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKAGCKFSVEEERVVIELQAEFGNKWAKIATYLPGRTDNDVKNFWSSRRKRLERTLHQRPPLSKLQKHKGKAPLSQVKVEEVHACSSNQVDNLSCHPSYMGNTEVFQMVNLQDLTKPNYQHFEANLHAVEVEATPLHTVPSFESSTEYNFPLLPESQMDFPLFPVCQDLVPEPFDPNFIDMFEQKKVATRLPSLGLDGNCRSTSSNCFKDFPTEIFEYFEHIPTSPEQ* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4743 293 ProSiteProfiles Myb-like domain profile. 71 114 IPR001005 -
Lja3g4743 293 PANTHER TRANSCRIPTION FACTOR DUO1 8 292 - -
Lja3g4743 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Lja3g4743 293 PANTHER MYB TRANSCRIPTION FACTOR 8 292 - -
Lja3g4743 293 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Lja3g4743 293 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Lja3g4743 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 118 IPR017930 -
Lja3g4743 293 Gene3D - 14 67 - -
Lja3g4743 293 SMART sant 14 64 IPR001005 -
Lja3g4743 293 SMART sant 68 116 IPR001005 -
Lja3g4743 293 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Lja3g4743 293 Pfam Myb-like DNA-binding domain 18 67 - -
Lja3g4743 293 Gene3D - 70 143 - -
Lja3g4743 293 CDD SANT 17 62 IPR001005 -
Lja3g4743 293 CDD SANT 71 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4743 Lja-Chr3 89474961 89476725 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g4743 Myb_DNA-bind_6 2.4e-12 CL0123