Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4685 ATGGATGAGAATGCCAGTTTGTATCAACCCACCAGTAACAAGTGGTGGAAAATGCCTTTCTCTGTTTTCTTCAACGATGCAAGGCGTGTTTTCAAGCTAGATGCCTTGGGTCGAGAGATAATAGGGATTGCTTTGCCATCTGCACTTGCTGTTGCAGCTGATCCCATTGCTTCTCTCATAGACACAACATTCATAGGCCACTTGGGACCGGTGGAACTTGCTGCTGCAGGAGTTTCCATTGCTGTGTTCAACCAAGCTTCTAGGATTACTGTATTCCCTCTAGTCAGTATCACAACTTCCTTTGTAGCTGAGGAAGATACTATCCAAAAGATGATTGCCAAAGCTGCTGCTGAAAATGATAAGGCTGATCTGCTTCAAGACATAGAAAATGGTACATCAAAACAGAACAACATCAAGGCTCTGAAAGATGAAGTTCCACATGAAGATGTGGAAAAATCAGCAACAACCGAGAAAAATGACACCAATGCTGGCGATGATGGCCATGGTAATAATACAAATACATGCAAGTCTTCTTCGGTTAAAAGCAGCGATAAGAGTAATGAGAAAGTTGGAAACAAGAAGCGACACATTGCTTCAGCATCAACAGCATTAATTTTTGGATCAATCCTCGGCCTTATTCAAACAGCAATTCTTATGTTTGGAGCCAAACCTCTCTTAACTGCGATGGGTCTGAAACATGATTCTCCTATGCTCGGACCAGCACAGAAGTACTTAAGATTGAGAGCATATGGTTCTCCTGCGGTTCTTCTCTCCTTGGCCATGCAAGGAATCTTTCGAGGGTTCAAGGACACAACAACTCCTTTATACATCATTGTTTCGGGATATGCGTTGAATGTGGTATTGGACCCAATATTAATCTTTAAATTAAAATTGGGCCTCGAAGGTGCAGCCATGTCACATGTCTTCTCCCAGTACGTGATGACATTCACCCTCTTTTTTATATTGACGAAAAAAGTGTATCTCGTGCCACCAAGCATAAAGGATCTGCAGATTTTTCGTTTTCTGAAAAATGGAGGTCTTTTGATGACAAGGGTAATAGCAGTGACATTCTGCATGACCTTTGCAGCCTCATTGGCAGCAAGATTAGGTCCAATTCCAATGGCTGCATTTCAACCCTGCTTACAGGTCTGGTTGACATCATCCCTTCTTGCTGATGGTTTGGCTGTTGCTGTACAGGCAATTCTAGCATGTTCCTTTACTGAGAAAGATTACAAGAAGGTAACTGCGGCGGCAACGCGAACCCTGCAGATGGGTTTTGTTCTAGGAGTGGGGCTCTCTGTTGCTGTTGGAATTGGGTTTTACTTTGGAGCTGGAGTGTTTTCAAAGAATGCTGATGTTGTGAACTTAATCAGGATTGGCATGCCGTTTGTTGCTGCTACCCAACCAATCAATTCATTAGCCTTTGTCTTTGATGGTGTTAACTATGGGGCTTCTGATTTTGCCTATGCTGCATACTCCTTGGTCTCGGTGTCTGTTGTGAGCATTGCTATAGAGTTTGTCCTCTATAGGAGCAAACAATTCGTTGGGTTATGGATTGCACTGTCCATCTATATGGTTCTTCGCATGGTGGTTGGTATATGGAGGATGGGAACAGGCACTGGACCTTGGCGCTATCTCAGAGGCCACTCAATGTTGTAG 1659 0.4352 MDENASLYQPTSNKWWKMPFSVFFNDARRVFKLDALGREIIGIALPSALAVAADPIASLIDTTFIGHLGPVELAAAGVSIAVFNQASRITVFPLVSITTSFVAEEDTIQKMIAKAAAENDKADLLQDIENGTSKQNNIKALKDEVPHEDVEKSATTEKNDTNAGDDGHGNNTNTCKSSSVKSSDKSNEKVGNKKRHIASASTALIFGSILGLIQTAILMFGAKPLLTAMGLKHDSPMLGPAQKYLRLRAYGSPAVLLSLAMQGIFRGFKDTTTPLYIIVSGYALNVVLDPILIFKLKLGLEGAAMSHVFSQYVMTFTLFFILTKKVYLVPPSIKDLQIFRFLKNGGLLMTRVIAVTFCMTFAASLAARLGPIPMAAFQPCLQVWLTSSLLADGLAVAVQAILACSFTEKDYKKVTAAATRTLQMGFVLGVGLSVAVGIGFYFGAGVFSKNADVVNLIRIGMPFVAATQPINSLAFVFDGVNYGASDFAYAAYSLVSVSVVSIAIEFVLYRSKQFVGLWIALSIYMVLRMVVGIWRMGTGTGPWRYLRGHSML* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4685 552 TIGRFAM matE: MATE efflux family protein 46 518 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja3g4685 552 Coils Coil 114 134 - -
Lja3g4685 552 PANTHER PROTEIN DETOXIFICATION 14 549 - -
Lja3g4685 552 Pfam MatE 192 291 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja3g4685 552 Pfam MatE 352 506 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja3g4685 552 CDD MATE_DinF_like 36 538 IPR044644 -
Lja3g4685 552 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 14 549 IPR044644 -
Lja3g4685 552 MobiDBLite consensus disorder prediction 165 181 - -
Lja3g4685 552 MobiDBLite consensus disorder prediction 140 164 - -
Lja3g4685 552 MobiDBLite consensus disorder prediction 135 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4685 Lja-Chr3 88870107 88876434 Dispersed/Wgd