Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4682 ATGGAGTCAGAAGGGGAAGCTGGGGCAAAGCCAATTACAACATCGGGTGCCCAAGTGTGTCAGATCTGTAGTGATAATGTTGGGAAGACTGTGGATGGTGAAGCATTCATTGCTTGTGATGTTTGTGCTTTCCCTGTCTGCAGGCCTTGTTATGAGTATGAGAGGAAAGATGGGAATCAGTCTTGCCCTCAGTGCAAAACCCGGTACAAGAGGCACAAAGGAAGTCCTGCAATTCTTGGAGACAGTGAAGAGGAGGGTGGTGCTGATGATGGTGCTAGTGACTTCAATTATGATTCAGAACATCAAAACCAAAAGCAGAAGATTTCGGAGCGTATGTTGGGCTGGCAATTAACATATGGGCGATCAGAGGAGGTTGGTGCTCCAAATTACGACAAGGAAGTTTCTCACAACCACATTCCTCGGCTGACCAGTGGACAAGAGGTCTCTGGAGAGTTTTCTGCAGGCTCACCTGAGAGGCTCTCGATGGCATCTCCCACAGCTGGTGGCGGGAAGCGTGTCCATAATCTTCCTTATTCATCTGATGTTAATCAATCTCCAAATATCAGGGTCGGGGATTCAGGAGGATTGGGCAATGTAGCATGGAAAGAAAGGGTTGATGGCTGGAAGATGAAGCAAGAAAAGAATGTTGTTCCAATGAGCACTGGCCAGGCTGCTTCTGAAAGAGGAGCTGGAGATATTGATGCCAGTACTGATGTGCTTGTCGATGATTCTCTGTTGAATGACGAAGCTCGACAACCTCTTTCCAGGAAGGTTTCCGTTCCGTCATCAAGAATAAATCCATATCGTATGGTCATTATTCTGCGGCTGATTATCCTTTGCATCTTTTTGCATTATCGAATAACAAATCCAGTGCCCAACGCATATGCATTGTGGTTGATATCTGTCATTTGTGAGATTTGGTTTGCCATATCATGGATATTGGATCAATTCCCTAAGTGGCTTCCTGTAAACCGTGAAACATATCTTGACAGGCTCGCGCTAAGATATGATCGGGAAGGAGAACCGTCACAGCTTGCAGCTGTTGACATTTTTGTTAGTACGGTTGACCCATTAAAGGAGCCCCCACTTGTCACCGCCAATACCGTACTATCTATTCTTGCAGTTGACTACCCAGTGGATAAGGTCTCCTGCTATGTCTCTGATGATGGTGCTGCGATGTTGACATTTGAAGCACTTGCTGAGACATCAGAGTTCGCAAGGAAATGGGTTCCTTTCGCCAAAAAGTATAGCATTGAACCCCGTGCACCTGAGTGGTACTTTGCGCTGAAGATTGATTATTTGAAAGATAAGGTTCATCCATCATTTGTCAAGGATCGTAGAGCAATGAAGAGAGAATATGAAGAATTTAAAATTCGTATTAATGGACTGGTTGCGAAGGCATTGAAAGTTCCCGAAGAAGGGTGGGTGATGCAAGATGGTACCCCATGGCCGGGAAATAACACCAGAGACCATCCAGGAATGATCCAGGTCTTCTTGGGCCAAAGTGGTGGACTTGACTCTGATGGTAATGAACTTCCACGTTTAGTCTATGTTTCTCGTGAAAAGCGTCCAAGTTTCCAACATCACAAGAAAGCCGGTGCCATGAATGCCCTTGTTCGAGTATCTGCAGTCCTTACCAATGGACCTTTTTTATTGAATCTTGATTGTGATCACTACATAAACAACAGCAAGGCCTTGAGAGAAGCAATGTGCTTTATGATGGATCCTAACCTTGGTAAAAATGTTTGCTATGTCCAGTTTCCGCAGAGGTTTGATGGTATTGATAGGAATGATCGATATGCCAATCGTAATACTGTTTTCTTTGATATAAACTTGAGAGGTTTGGATGGCATTCAAGGTCCTGTTTATGTGGGTACTGGGTGTGTCTTCAACAGGACTGCTTTATATGGTTATGAACCTCCTCTTAAACCCAAGCATAAAAAGCCTGGGTTGCTATCATCGCTATTTGGTGGAGATAGAAAGAAGAGCTCAAAATCTAATAAGAAGGGATCAGACAAGAAAAAGTCTAGCAAGCATGTAGACCCAACCGTGCCAATCTTCAGTCTCGAGGATATAGAAGAAGGAGTAGAAGGGACTGGATTTGATGATGAGAAATCACTACTTATGTCACAAATGAGCCTTGAGAAAAGATTCGGTCAGTCTGCTGTTTTCGTAGCCTCTACGCTGATGGAGAATGGTGGTGTTCCTCAGTCTGCTACTCCAGAAATTCTTCTTAAGGAGGCTATTCATGTTATCAGCTGTGGATATGAGGATAAATCAGAATGGGGAACAGAGATAGGATGGATTTATGGTTCTGTCACAGAAGATATTCTTACTGGATTCAAGATGCATGCCCGAGGTTGGCGGTCTATATACTGCATGCCTAAGCGCCCAGCATTTAAAGGTTCTGCTCCTATCAATCTTTCGGATCGTCTAAACCAAGTACTTCGATGGGCTTTAGGATCTGTTGAAATTCTACTAAGCAGACATTGTCCCATCTGGTACGGTTATGGTGGAAGACTAAAGTGGCTCGAACGGTTTGCATATGTGAACACCACAATCTATCCAATCACTGCCATTCCCCTTCTCATGTATTGTACCTTGCCCGCTGTCTGCCTTCTGACCAACAAGTTCATCATTCCCCAGATCAGCAACATTGCAAGTATATGGTTTATCTCTCTCTTTCTTTCCATTTTTGCAACTGGGATCCTTGAGATGAGGTGGAGTGGTGTTGGAATTGATGAGTGGTGGAGGAATGAACAATTCTGGGTTATTGGTGGTGTGTCAGCACATCTCTTTGCTGTGTTCCAAGGTCTACTCAAAGTGCTCGCTGGAATTGACACCAACTTCACTGTCACCTCCAAGGCATCAGATGAAGATGGCGACTCTGCAGAGCTCTACTTGTTTAAATGGACAACCCTTCTCATACCCCCCACAACCCTTCTCATAATAAACTTGGTTGGGGTTGTTGCTGGAATTTCCTATGCCATTAACAGTGGTTACCAGTCATGGGGTCCCCTCTTTGGTAAGCTTTTCTTTGCATTTTGGGTCATCATCCATCTCTACCCCTTCCTCAAAGGTCTCATGGGACGGCAGAACCGAACACCGACCATTGTGGTGGTCTGGTCCATTCTTCTTGCATCCATTTTCTCTCTGTTATGGGTACGAGTTGATCCGTTCACCACAAGAGTCACCGGTCCTAAGGTTGAGGAGTGTGGAATTAACTGCTAG 3231 0.4475 MESEGEAGAKPITTSGAQVCQICSDNVGKTVDGEAFIACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPAILGDSEEEGGADDGASDFNYDSEHQNQKQKISERMLGWQLTYGRSEEVGAPNYDKEVSHNHIPRLTSGQEVSGEFSAGSPERLSMASPTAGGGKRVHNLPYSSDVNQSPNIRVGDSGGLGNVAWKERVDGWKMKQEKNVVPMSTGQAASERGAGDIDASTDVLVDDSLLNDEARQPLSRKVSVPSSRINPYRMVIILRLIILCIFLHYRITNPVPNAYALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALAETSEFARKWVPFAKKYSIEPRAPEWYFALKIDYLKDKVHPSFVKDRRAMKREYEEFKIRINGLVAKALKVPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGQSGGLDSDGNELPRLVYVSREKRPSFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKNVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGLLSSLFGGDRKKSSKSNKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGTGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPEILLKEAIHVISCGYEDKSEWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYGGRLKWLERFAYVNTTIYPITAIPLLMYCTLPAVCLLTNKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDSAELYLFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPKVEECGINC* 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4682 1076 MobiDBLite consensus disorder prediction 647 680 - -
Lja3g4682 1076 SUPERFAMILY RING/U-box 5 86 - -
Lja3g4682 1076 MobiDBLite consensus disorder prediction 73 109 - -
Lja3g4682 1076 SUPERFAMILY Nucleotide-diphospho-sugar transferases 362 888 IPR029044 -
Lja3g4682 1076 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 5 1076 - -
Lja3g4682 1076 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 95 IPR013083 -
Lja3g4682 1076 ProSiteProfiles Zinc finger RING-type profile. 20 66 IPR001841 -
Lja3g4682 1076 CDD mRING-HC-C4C4_CesA_plant 18 68 - -
Lja3g4682 1076 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 468 639 IPR029044 -
Lja3g4682 1076 MobiDBLite consensus disorder prediction 144 171 - -
Lja3g4682 1076 Pfam Zinc-binding RING-finger 10 85 IPR027934 -
Lja3g4682 1076 Pfam Cellulose synthase 348 1069 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lja3g4682 1076 PANTHER CELLULOSE SYNTHASE 5 1076 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4682 Lja-Chr3 88834167 88841585 Wgd