Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4677 ATGTACATCAAGGAGGTTTGCTTGGAAGGGTTCAAATCGTACGCGACCCGAACCGTCGTTCCTGGCTTCGACCCCTTCTTCAACGCCATCACTGGGTTGAACGGTTCCGGCAAATCGAACATTCTCGATTCCATTTGCTTCGTTCTCGGCATCACGAACTTGCAGCAGGTTCGTGCTGCTAACCTTCAGGAGCTCGTGTATAAGCAAGGTCAAGCCGGAATTACCAAGGCCACGGTGTCGATTGTGTTCGATAACTCCGATAGGAATCGAAGCCCTCTTGGATATGAAGACCATTCAGAGATTACAGTTACCAGACAGATTGTGGTTGGAGGGAGGAACAAATATTTGATCAATGGGAAACTTGCGCAGCCTAGTCAAGTCCAAAACCTTTTCCATTCGGTGCAGCTAAATGTTAACAATCCGCATTTCCTGATAATGCAAGGGCGCATCACTAAGGTTTTAAATATGAAACCGCCAGAGATATTGTCTATGCTTGAGGAAGCTGCGGGGACAAGAATGTATGAGACAAAGAAAGAGGCTGCTCTGAAAACACTTGAGAAGAAGCAGGGTAAAGTTGATGACATTAACAAGCTTCTTGATCAAGAGATATTGCCCGCTCTGGAGAAGTTAAGGAAAGAAAGGACACAGTACATGCAATGGGCTAATGGCAATGCTGAATTAGATAGGCTGAGAAGATTTTGTATTGCTTATGAGTATGTTCACGCAGAGAGGGTAAGAGACAATGCTATTTCTGAGGTGGAACAAGTAAAAGCCAAGATAACTGAGATTGATGACACTGCTAAGACAACTCAGCTGGAAGTAAAGGAAATGGAGACGAAAATAGCTCAATTGACTGCTGAGAAGGAAGCAAACATGGGTGGAGAAGCAAAATCTCTGTCAGAGAAGGTAGATGGACTTTCCCAGAGTCTTGTGAAGGAAACATCTGTCCTAAACAATAAGGAAGACACTCTACGGAGTGAAGAAGCCAACAAAGAAAAAATTGTTAAAAATATTGAAGAATTGAAGCGATCTGTAGAAGAGAAGGCCTCTTCCATAAAAAAGGCTGAAGAGGGAGCAGCTGATTTGAAAAATAGAGTAGATGAGCTCTCAAAGAGTCTGGAAGAGCATGAAAAGGACTACCAGGGTGTTTTAGCTGGCAAGAGCAGTGGTAATGAAGAGAAATGCATGGAGGATCAACTAGCTGATGCAAAGATAGCAGTTGGGAGTGCTGAAACAGAATTGAAACAGCTGAAAACCAAAATTAGCCATTGTGAAAAGGAACTGAAAGAGAAAACAAATCAATTAAGGTCCAAACGTGAAGAAGCTATATCTGTAGAAAATGAGCTCAACACCAGACGAAAAGAGGTGGAAAATGTTAAAAAGGGATTGGAGTCTCTTCCTTATAAAGAGGGTGAGATGGAAGCTTTGCAAAAGGATCGTGAATCTGAAAGAGATTCTGTGCAACGGTTGAAGGATGAAGTACGAAACATTTCAGCATACTTATCAAATGTTGAATTTACATATCGTGATCCTGTGAAGAACTTTGACCGATCAAAGGTGAAAGGTGTTGTTGCAAATCTCATCAAAGTAAAGGATAGTTCCACAATGACTGCCCTAGAGGTTACAGCTGGTGGAAAATTGTATAATGTTGTAGTTGACACAGAAAGTACTGGCAAGCAATTACTACAGAATGGCGGTCTTAAACGAAGGGTGACAATTATACCTTTAAACAAAATACAATCAAGTGTTGTTCCCTCCAGAGTTCAACAAGTGGCTGCTAGATTGGTGGGCAAGGAGAATGCTGCTGTTGCACTTTCTTTGGTTGGTTATGATGAAGATTTGAAGACTGCAATGGAGTATGTCTTTGGTTCAACATTTGTTTGCAAAACCATTGATGCTGCGAAAGAGGTGGCATTTAATCGGGAGATTCACTCTACAAGTGTCACACTAGAAGGAGATATATTTCAGCCAAGTGGTCTTCTAACTGGTGGAAGCCGCAAGGGCAGTGGTGATCTTTTGAGGCAACTTGATGCTTTGGCTGAGGCTAACTCAAATCTTTCAGAGCATCAAAAAAGGTTATCAGAGATTGAGGAAAAGATCATGAAGCTTCTTCCCCTTCAGAAAAAATTTAAAGACCTCAAAGCCCAATTGGAACTTAAATCATATGATCTTTCATTGTTTCAGAGCAGAGCTGAGCAGAATGAGCATCATAAGCTTGGAGAATTAGTGAAGAAGATTGAGCAAGAGCTTGAAGAAGCAAAGTCTGCAGTCAAGGAAAAGCAGCTTTTATATGAGGACTGTGTCAAGACTGTTTCAACACTCGAAACATCAATCAAGGAACATAACAATAGTCGAGAGAGTAGGCTAAAAGGCTTGGAAAAAAAGATAAAGTCAGTCAAATCCCAAATGCAGTCATCTTTAAAAGATCTGAAGGTACATGATAATGAAAAGGAGAGGCTTGTAATGGAAATGGACGCCGTTATCCAGGAGCAAGCATCTTTGGAAAATCAATTAGAGGCGATGCAAACACAGATTAGTAATCTTGTCTCAGAATTAGAAGAACAAAGATCCACGGTTGTTGCTGCAAGGAATAATCTTGATCAAGTTCAGTCACAGTTGAATTCAGTTCGTCAGAAAATGAAGGAATGTGACAAGGAAATCAATGGTATTATTAACGAGCAGAAAAAGCTTGAGCACAGACTTAGTGAGAGTAGTCTTGAAAGGAAGAGGATGGAAAATGAGGTAAAACGGATGGAGATGGAACAGAAAGACTGTTCTGTCAGGGTGGATAAATTGATAGAGAAGCATTCGTGGATTGCTTCTGAAAAACAGTTGTTTGGTAGAAGTGGCACGGATTATGATTTTTCTTCCCGTGATCCTGGTAAAGCAAGGGAAGAACTTGAGAAGCTTCAAGCTGAACAATCTGGGCTTGAGAAAAGGGTGAACAAGAAAGTCATGGCAATGTTTGAGAAGGCAGAAGATGAGTACAATGATTTGATGTCAAAGAAAAACATAATTGAGAATGACAAGTCCAAAATCAAGAAGGTGATTGAAGAGCTAGATGAGAAGAAGAAGGAGACACTAAATGTTACTTGGACCAAAGTGAACAGTGACTTTGGATCCATCTTTTCTACCCTATTACCTGGCACGATGGCTAAGTTAGAACCTCCAGAAGGATGCAGTTTTCTTGATGGTCTTGAGGTTAAAGTTGCATTTGGAAGTGTGTGGAAACAGTCATTGTCTGAACTGAGTGGAGGTCAGCGATCACTGCTTGCACTTTCTCTAATTCTGGCACTGCTTCTGTTCAAACCTGCTCCCCTTTACATCTTGGATGAGGTTGATGCGGCTCTTGATTTGAGCCACACACAAAACATAGGGAGAATGATAAAGGCTCACTTTCCTCACTCCCAGTTTATTGTGGTTTCACTGAAGGAAGGCATGTTCAATAATGCTAATGTCCTTTTCCGGACAAAATTTGTTGATGGGGTTTCAACTGTTCAGAGAACTGTTGCAACTAAACAGAACAAGTAA 3531 0.4121 MYIKEVCLEGFKSYATRTVVPGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRAANLQELVYKQGQAGITKATVSIVFDNSDRNRSPLGYEDHSEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQGKVDDINKLLDQEILPALEKLRKERTQYMQWANGNAELDRLRRFCIAYEYVHAERVRDNAISEVEQVKAKITEIDDTAKTTQLEVKEMETKIAQLTAEKEANMGGEAKSLSEKVDGLSQSLVKETSVLNNKEDTLRSEEANKEKIVKNIEELKRSVEEKASSIKKAEEGAADLKNRVDELSKSLEEHEKDYQGVLAGKSSGNEEKCMEDQLADAKIAVGSAETELKQLKTKISHCEKELKEKTNQLRSKREEAISVENELNTRRKEVENVKKGLESLPYKEGEMEALQKDRESERDSVQRLKDEVRNISAYLSNVEFTYRDPVKNFDRSKVKGVVANLIKVKDSSTMTALEVTAGGKLYNVVVDTESTGKQLLQNGGLKRRVTIIPLNKIQSSVVPSRVQQVAARLVGKENAAVALSLVGYDEDLKTAMEYVFGSTFVCKTIDAAKEVAFNREIHSTSVTLEGDIFQPSGLLTGGSRKGSGDLLRQLDALAEANSNLSEHQKRLSEIEEKIMKLLPLQKKFKDLKAQLELKSYDLSLFQSRAEQNEHHKLGELVKKIEQELEEAKSAVKEKQLLYEDCVKTVSTLETSIKEHNNSRESRLKGLEKKIKSVKSQMQSSLKDLKVHDNEKERLVMEMDAVIQEQASLENQLEAMQTQISNLVSELEEQRSTVVAARNNLDQVQSQLNSVRQKMKECDKEINGIINEQKKLEHRLSESSLERKRMENEVKRMEMEQKDCSVRVDKLIEKHSWIASEKQLFGRSGTDYDFSSRDPGKAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWTKVNSDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVKVAFGSVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVATKQNK* 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4677 1176 Coils Coil 817 928 - -
Lja3g4677 1176 Coils Coil 736 763 - -
Lja3g4677 1176 Pfam RecF/RecN/SMC N terminal domain 2 1161 IPR003395 -
Lja3g4677 1176 Coils Coil 672 699 - -
Lja3g4677 1176 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2 1 1174 - -
Lja3g4677 1176 Gene3D - 1 202 IPR027417 -
Lja3g4677 1176 Coils Coil 400 448 - -
Lja3g4677 1176 Coils Coil 982 1026 - -
Lja3g4677 1176 Coils Coil 267 287 - -
Lja3g4677 1176 SUPERFAMILY Smc hinge domain 476 684 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lja3g4677 1176 Coils Coil 473 493 - -
Lja3g4677 1176 Gene3D - 994 1176 IPR027417 -
Lja3g4677 1176 SMART SMC_hinge_2 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lja3g4677 1176 CDD ABC_SMC2_euk 1 156 IPR027120 GO:0005524|GO:0016887
Lja3g4677 1176 Gene3D - 517 675 - -
Lja3g4677 1176 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2-2 1 1174 - -
Lja3g4677 1176 PIRSF SMC 1 1155 IPR024704 GO:0005524|GO:0016887
Lja3g4677 1176 Gene3D - 577 667 - -
Lja3g4677 1176 Coils Coil 317 379 - -
Lja3g4677 1176 Coils Coil 782 809 - -
Lja3g4677 1176 Pfam SMC proteins Flexible Hinge Domain 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lja3g4677 1176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1157 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4677 Lja-Chr3 88786961 88797286 Dispersed