Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja3g4675 | ATGGCGGAGCAAACGAGTGCCGCCGTGAACGACGGCGAACCAGAATCGCGACAGAAGGAACACCGCACCAACAACGACAACAAGGAGAAGAGTTCAGATCCAGAGCTATTTTGCTGTTTGCTGCAGCCCGCAACCGCCGACGGCGATCCCGAATACATCGGAATTCGGCGCCTCCTCCTTCACCGCAAGGCCGAGGCCGGCGTTCTTCGCCGTAAAGATTGGAGATGCAATGGAAAAACTTACGTGGCGTACCGGAATTACATATGTAAGCCTAGGAACTGGGAAACTTTACGTGCCTCGAGCCTTCAAACTACTCCAGGAAACAGTGGCCGATGGATTTCATCTTCAAGTCCACTCTCCCGTTGGTCTGAGGTGGACAGCTGGAGTTCTGGGCGGGATGTGCTAAGTGCAAATCCAGTATCTAATCATAGATCAAGTTTTGGCTCAAATGCAAGTGACTCTGATCGTCCGCGGCGTCATGGGGTTGAGCCTGCCTATTCTTTTGTAGGAATGCATTGCATCTTTGATCAGTGCAGAGCCTCTGTTACGGTGTTAAAGTTTGGGCACATGAGTTCTGATCTACTTGCTTATGGGGCATCAGATGGAACCTTGACCGTGTGCAGTGTTTCTGACGCACCTTCAGTCATCAAACAGTTAAACGGTCATTCCAAAGATGTCACAGATTTTGATTTTTCATCAAACAATCAGTACATTGCATCGTCTTCATTGGATAAAACTGTGAGAGTATGGGAGATATACAAAGGCATTTGCATACGGGTGATATATGGAGTTTCTTCACAATTATGTATCCGTTTTCACCCTGTAAATAACAACTTCCTTTCAGTTGGCAATGCAAATAAAGAAATCAATGTGTTTAATTTTAGCACTGGAAGGGTAATTAATAAGTCAGTATTTGACAGTGAAGTTACCTCTATGGATCACGATCATACGGGTCATCTCATATTTTGTGGAGATGCACAGGGATGTATATACTCAGTAAATATGAACTCTCACACCGGTGGGTTGTCCCGCTCTCATCGATATCGAAGTAGCAGCAAACACAAATCTCCGGTCACAACAGTGCAGTATCGGAGTTTCTCTCTGCTAGCTCGAGGACCTGTGTTGTTGACATGTACCCAGGATGGAAATCTGTCTTTCTTCAGTGTGGCTTTGGAGATTAAGGGTTATTTAACACTTCGGTGCTCTCTCAAATTAACTCCACGGATACACAAAATTCAAGCTTCTTTCTGTCCTCTTCTTTCCCTTGAAAAAGGTGAATTCATAGTTTCTGGAAGTGAGGACTCAAATGTTTATTTCTATGATTTAACAAAGCCAAAGCATACATGTGTGAACAAGCTACAGGGTCATCGGTTTCCTGTTATGGGTATTGCTTGGAACCATGGAGAAAATTTGCTGGCGTCATCTGATTTTTATGGCGTAGTAATTGTTTGGAAGAGAGAAAAAGCAAATCAAAACAAGAATACATAG | 1488 | 0.4429 | MAEQTSAAVNDGEPESRQKEHRTNNDNKEKSSDPELFCCLLQPATADGDPEYIGIRRLLLHRKAEAGVLRRKDWRCNGKTYVAYRNYICKPRNWETLRASSLQTTPGNSGRWISSSSPLSRWSEVDSWSSGRDVLSANPVSNHRSSFGSNASDSDRPRRHGVEPAYSFVGMHCIFDQCRASVTVLKFGHMSSDLLAYGASDGTLTVCSVSDAPSVIKQLNGHSKDVTDFDFSSNNQYIASSSLDKTVRVWEIYKGICIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEINVFNFSTGRVINKSVFDSEVTSMDHDHTGHLIFCGDAQGCIYSVNMNSHTGGLSRSHRYRSSSKHKSPVTTVQYRSFSLLARGPVLLTCTQDGNLSFFSVALEIKGYLTLRCSLKLTPRIHKIQASFCPLLSLEKGEFIVSGSEDSNVYFYDLTKPKHTCVNKLQGHRFPVMGIAWNHGENLLASSDFYGVVIVWKREKANQNKNT* | 496 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja3g4675 | 495 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 219 | 260 | IPR001680 | GO:0005515 | |
| Lja3g4675 | 495 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 238 | 252 | IPR019775 | - | |
| Lja3g4675 | 495 | MobiDBLite | consensus disorder prediction | 13 | 32 | - | - | |
| Lja3g4675 | 495 | PANTHER | WD REPEAT PROTEIN 26-RELATED | 17 | 488 | - | - | |
| Lja3g4675 | 495 | PANTHER | WD REPEAT-CONTAINING PROTEIN 13 | 17 | 488 | - | - | |
| Lja3g4675 | 495 | SMART | WD40_4 | 212 | 251 | IPR001680 | GO:0005515 | |
| Lja3g4675 | 495 | SMART | WD40_4 | 405 | 441 | IPR001680 | GO:0005515 | |
| Lja3g4675 | 495 | SMART | WD40_4 | 254 | 293 | IPR001680 | GO:0005515 | |
| Lja3g4675 | 495 | SMART | WD40_4 | 446 | 485 | IPR001680 | GO:0005515 | |
| Lja3g4675 | 495 | SMART | WD40_4 | 345 | 388 | IPR001680 | GO:0005515 | |
| Lja3g4675 | 495 | SMART | WD40_4 | 168 | 208 | IPR001680 | GO:0005515 | |
| Lja3g4675 | 495 | SMART | WD40_4 | 296 | 334 | IPR001680 | GO:0005515 | |
| Lja3g4675 | 495 | Gene3D | - | 166 | 269 | IPR015943 | GO:0005515 | |
| Lja3g4675 | 495 | MobiDBLite | consensus disorder prediction | 140 | 159 | - | - | |
| Lja3g4675 | 495 | Gene3D | - | 270 | 495 | IPR015943 | GO:0005515 | |
| Lja3g4675 | 495 | SUPERFAMILY | WD40 repeat-like | 180 | 488 | IPR036322 | GO:0005515 | |
| Lja3g4675 | 495 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Lja3g4675 | 495 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 453 | 494 | IPR001680 | GO:0005515 | |
| Lja3g4675 | 495 | Pfam | WD domain, G-beta repeat | 216 | 250 | IPR001680 | GO:0005515 | |
| Lja3g4675 | 495 | Pfam | WD domain, G-beta repeat | 449 | 485 | IPR001680 | GO:0005515 | |
| Lja3g4675 | 495 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 219 | 252 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja3g4675 | Lja-Chr3 | 88763275 | 88770226 | Transposed |