Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4277 ATGGATATAGATCTCAGGTTACCCTCTGGTGAACATGATAAAGAGGATGAAGAAACAACTACAATTGATAACATGTTGGAGGGCGAAGAAAAGTTGCATAATGGAGGCATAGACAGCAGAAATATGGTTGATGCTGGTATTGAGGTACATGCTCTAAATGGTGGAGATTTGAATTCACCCTCAGTTGATATGGTAATGTTTAAGGAAGATACAAATCTTGAGCCACTTTCTGGCATGGAATTTGAGTCTCATGGGGAGGCATATTCTTTCTACCAAGAATATGCACGGTCAATGGGATTCAACACTGCAATACAAAATAGTCGCCGTTCAAAAACATCAAGAGAATTTATAGATGCAAAGTTCGCTTGTTCCAGATATGGAACAAAACGGGAGTATGACAAATCATTCAATCGACCACGTGCACGACAGAACAAGCAAGATTCTGAAAATTCAACTGGTCGAAGATCCTGTTCTAAGACTGATTGTAAAGCCAGCATGCATGTAAAAAGAAAACCAGATGGAAAATGGGTTATACATAGCTTCGTGAAGGAGCATAATCATGAGCTCTTACCAGCCCAAGCAGTCAGTGAACAAACAAGAAGAATGTATGCTGCGATGGCTAGGCAGTTTGCTGAATACAAAACTGTGGTTGGTCTCAAGAATGAGAAGAATCCATTTGATAAAGGTCGCAATTTGGGCCTGGAGTTGGGAGAGGCTAAACTTATGCTCGATTTTTTTATACAGATGCAAAATATGAATTCTAACTTCTTTTATGCAGTAGATCTTGGTGAGGATCAGCGTCTGAAAAGTTTTGTATGGATCGATGCTAAAAGTAGGCATGACTATACCAACTTTTGCGATGTAGTGTCGTTTGATACCACCTATATTAGGAACAAGTATAAGATGCCTCTTGGTCTTTTTGTTGGAGTGAACCAGCACTACCAATTTATATTACTTGGGTGTGCCTTGATATCAGATGAAAGTGCCACAACTTTTTCCTGGCTGTTCCGGACGTGGCTGAAAGGAGTTGGTGGTCAAGCTCCGAAAGTGATAATTACTGACCATGACCAGACTTTAAAGTCAGTTATTTCAGAGATCTTTCCTAATGCTTGCCATTGTGTTTGCTTATGGCATGTATTGGGGAAGGTATCTGAAAATTTAGCTCCTGTAATTAAAAAACAAGATAATTTTATGGCAAAGTTTGAAAAGTGCATATTTAGGTCATTGACCGGTGATGACTTTGAAAAGAGATGGAGAAAAATTGTTGATAGATTTGAACTTCAAGAGGATGAATGCATGCAGTCATTGTTTGAAGATCGTAAGTTATGGGCACCAACATTCATGAGGGATGTTTTCTTAGGTGGTATGTCTACTGCACATCGATCTGAAAGTGTAAATTCCTTCTTTGACAAATATGTTCATAAGAAGACCTCTGTGCAAGATTTTGTCAAACTGTATGAAGCAATCTTGCAAGACAGGTATGAAGAGGAAGCAAAAGCTGATTCTGATACTTGGAATAAAGTGGCGACATTAAAAACTCCTTCACCTTTAGAGAAGAGTGTTGCTGGTATTTGCACACATGCTATATTCAAAAAGATTCAAGCTGAGGTTATTGGTGCAGTTGCTTGCCATCCTAAAATTGACAGGCAGGATGAGACAATCATTGTTCACAGGGTTCATGATATGGAAACAAATAAAGACTTCTTTGTTGTGGTGAATGAAGTAAAATCAGAGGTGTCTTGTATATGTCGCTTATTTGAATATAAAGGTTATCTTTGTCGACATGCATTGGTGGTTCTTCAATACTCAGGCCAATCAGTGTTCCCATCTCAATATATTTTGAAACGGTGGACAAAAGATGCAAAGGTCAGGAATATAATGGGAGAAGAATCTGATCATATGCTGGCAAGGGTGCAACGATACAATGATTTATGTCAGCGAGCACTAAAACTGAGTGAAGAGGGATCATTATCTCAAGAGAGTTATAGTCTTGCATTCCATGCGCTGAATGAAGCACACAAAGCTTGTGTGGGTTTTAACAATTCTAGTAAGAGTCCCGCAGAAGCTGGTATGTCAGGGGCTCATGGTCAGCTTTCTACTGAAGAAGATACACAGAGTAGAAATGTGGGCAAGTCAAACAAAAAGAAGAATCCAACTAAAAAGAAAAAGATGAACTCTGAGGCAGAAGTGATGACTGTTGGGGCACTAGACAACTTGCAACCAATGGACAAATTCAGTACAAGAGCTGCAGTAACCCTTGAAGGTTATTATGGGACGCAACAGAGTGTGCAGGGGATGTTGAACTTAATGGGGCCAACACGTGATGATTACTACGGAAATCAACAGACTCTACAGGGGCTGGGACCAATGAGTTCCATAGCAAACAGCCATGATGGTTATTATGGTGCACACCAGAACATGCCTGGTTTGGCACAGCTGGATTTTTTGCGCACTAGTTTCACCTATGGAATTCGGGATGATCCTAATGTGAGACCAGGACAGTTGCATGAGGATCCATCAAGACATGCGTTGGGGAAACGAGGACTGTAA 2550 0.402 MDIDLRLPSGEHDKEDEETTTIDNMLEGEEKLHNGGIDSRNMVDAGIEVHALNGGDLNSPSVDMVMFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQDSENSTGRRSCSKTDCKASMHVKRKPDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKTVVGLKNEKNPFDKGRNLGLELGEAKLMLDFFIQMQNMNSNFFYAVDLGEDQRLKSFVWIDAKSRHDYTNFCDVVSFDTTYIRNKYKMPLGLFVGVNQHYQFILLGCALISDESATTFSWLFRTWLKGVGGQAPKVIITDHDQTLKSVISEIFPNACHCVCLWHVLGKVSENLAPVIKKQDNFMAKFEKCIFRSLTGDDFEKRWRKIVDRFELQEDECMQSLFEDRKLWAPTFMRDVFLGGMSTAHRSESVNSFFDKYVHKKTSVQDFVKLYEAILQDRYEEEAKADSDTWNKVATLKTPSPLEKSVAGICTHAIFKKIQAEVIGAVACHPKIDRQDETIIVHRVHDMETNKDFFVVVNEVKSEVSCICRLFEYKGYLCRHALVVLQYSGQSVFPSQYILKRWTKDAKVRNIMGEESDHMLARVQRYNDLCQRALKLSEEGSLSQESYSLAFHALNEAHKACVGFNNSSKSPAEAGMSGAHGQLSTEEDTQSRNVGKSNKKKNPTKKKKMNSEAEVMTVGALDNLQPMDKFSTRAAVTLEGYYGTQQSVQGMLNLMGPTRDDYYGNQQTLQGLGPMSSIANSHDGYYGAHQNMPGLAQLDFLRTSFTYGIRDDPNVRPGQLHEDPSRHALGKRGL* 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4277 849 MobiDBLite consensus disorder prediction 686 727 - -
Lja3g4277 849 SMART 26again6 579 606 IPR006564 GO:0008270
Lja3g4277 849 Pfam SWIM zinc finger 569 602 IPR007527 GO:0008270
Lja3g4277 849 Pfam FAR1 DNA-binding domain 89 191 IPR004330 -
Lja3g4277 849 MobiDBLite consensus disorder prediction 132 164 - -
Lja3g4277 849 Pfam MULE transposase domain 288 380 IPR018289 -
Lja3g4277 849 ProSiteProfiles Zinc finger SWIM-type profile. 568 604 IPR007527 GO:0008270
Lja3g4277 849 MobiDBLite consensus disorder prediction 830 849 - -
Lja3g4277 849 MobiDBLite consensus disorder prediction 827 849 - -
Lja3g4277 849 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 47 778 - -
Lja3g4277 849 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 47 778 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4277 Lja-Chr3 82744969 82751981 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja3g4277 FAR1 2.1e-27 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4277 3 82744969 82751981 Lja3g2707 3 39293706 39298989 PCT