Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4178 ATGTCTATACATCAGGAAAATTCTGATATCAATGGTGTATCAGCTGCAGGGCCAGGATCTTGCCTTTATGATCTCTTCTGCTCTGAAACACCAAGTTTGAATTCTCAAAGTCGAAAGGAGGAATGGATATTTTCTGGACCACAGCAAAGGCTAGACAATCTGATGCGTCAAGCTGGGAACAGGTATTGCGCTGATTGTGGATCATTAGAGCCAAAATGGGTATCTTCAAGTCATGGAGTATTTATCTGCATCAAGTGCTCTGGTATACATAGAAGCCTAGGAGTCCATATCTCGAAGGTTCTATCACTGAAGCTAGATGAATGGACAGATGAACAAGTTGATGCATTAGTGAAGATGGGTGGAAATACAGTGATCAATAAGAAGTATGAAGCTTGCATGCCAAGTAACATAAAAAAACCAAATCCACATTCCACCATTGAGGAGCGCTCTGATTATATTAGGAGAAAATATGAGCTGCTACAGTTTTTGGATACCGAGGAGAATTTGTGCTGTCCCTTTGTACCAACTCATGGAAGAACTTCATCCTCGTGCAGCAGTTCCTCCTCACAATACAAAAAACAATATGATAAACAACAAACTAAAAGTCGTATTGGTTTATCATTTCGAAACAGCTGGGGAAGAAAAGATTCTGAGAATAAAAGTACAAAGAAGAGCAACTCGTTGGCAGGTATGATTGAATTTGTTGGATTGATAAAGGTTAATGTGGTCAAAGGCACAAACCTGGCTATCCGGGATGTAATGACTAGTGACCCTTATGTCATCCTCTCTCTGGGTCACCAATCGATGAAGACACGTGTCATAAAGAGCAATTTAAATCCAGTTTGGAATGAAAGCCTGATGCTGTCAATTCCCGATAGCGTTCCTCCTCTTAAAGTGCTTGTGTACGACAAGGACACTTTCTCAACTGATGATTTCATGGGTGAGGCTGAAATAGATATTCAACCTCTAGTCGCAGCTGCAAAGGCATATGAGAAATCATCGATCAACGAGTCGATGCAGCTTGGGAAATGGGTAGCGAGTGGTGACAACAATCTTGTGAAAGATGGAATCATCACCCTTGAGGATGGGAAGGTCAGACAGGACATCTCAGTGAGGCTACAGAGAGTTGAGAGAGGTGTGCTGGAGATTGAGCTTGAATGTGTTCCTCTTACTCAGTAG 1179 0.419 MSIHQENSDINGVSAAGPGSCLYDLFCSETPSLNSQSRKEEWIFSGPQQRLDNLMRQAGNRYCADCGSLEPKWVSSSHGVFICIKCSGIHRSLGVHISKVLSLKLDEWTDEQVDALVKMGGNTVINKKYEACMPSNIKKPNPHSTIEERSDYIRRKYELLQFLDTEENLCCPFVPTHGRTSSSCSSSSSQYKKQYDKQQTKSRIGLSFRNSWGRKDSENKSTKKSNSLAGMIEFVGLIKVNVVKGTNLAIRDVMTSDPYVILSLGHQSMKTRVIKSNLNPVWNESLMLSIPDSVPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVAAAKAYEKSSINESMQLGKWVASGDNNLVKDGIITLEDGKVRQDISVRLQRVERGVLEIELECVPLTQ* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4178 392 ProSiteProfiles ARF GTPase-activating proteins domain profile. 48 170 IPR001164 GO:0005096
Lja3g4178 392 Pfam C2 domain 237 325 IPR000008 -
Lja3g4178 392 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 1 392 - -
Lja3g4178 392 SMART arf_gap_3 49 170 IPR001164 GO:0005096
Lja3g4178 392 Pfam Putative GTPase activating protein for Arf 49 163 IPR001164 GO:0005096
Lja3g4178 392 Gene3D Arf GTPase activating protein 31 170 IPR038508 -
Lja3g4178 392 ProSiteProfiles C2 domain profile. 219 334 IPR000008 -
Lja3g4178 392 Gene3D C2 domain 235 390 IPR035892 -
Lja3g4178 392 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 235 327 IPR035892 -
Lja3g4178 392 CDD C2_ArfGAP 235 379 - -
Lja3g4178 392 MobiDBLite consensus disorder prediction 178 202 - -
Lja3g4178 392 SMART C2_3c 237 332 IPR000008 -
Lja3g4178 392 PRINTS HIV Rev interacting protein signature 60 79 IPR001164 GO:0005096
Lja3g4178 392 PRINTS HIV Rev interacting protein signature 79 96 IPR001164 GO:0005096
Lja3g4178 392 PRINTS HIV Rev interacting protein signature 100 121 IPR001164 GO:0005096
Lja3g4178 392 CDD ArfGap 51 157 - -
Lja3g4178 392 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 392 IPR044518 GO:0005096|GO:0005543
Lja3g4178 392 SUPERFAMILY ArfGap/RecO-like zinc finger 49 163 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4178 Lja-Chr3 81494988 81501409 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4178 3 81494988 81501409 Lja3g2465 3 30843019 30847482 PCT