Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4176 ATGGCTTCTGGTAATCCATTCTTTGATCCTCCTCAAGCTGAAGAGCCAACAGAAATTTGTGAAATTGTTAATGATCCTACACCGACTGCTCTTAAACCTAATGGGACTGTTTCAAACAGTGTTCGTGAGCTTTTGGAGTGCCCTGTGTGCTTGAATGCCATGTATCCTCCAATCCACCAGTGTTCAAATGGTCACACTTTATGCTCGGATTGCAAACCCAGAGTCCATGACCGTTGTCCTATTTGTATGCACCAGCTTGGTAATATCAGATGTCTGGCATTGGAGAAGGTGGCTGCATCTTTAGAACTTCCTTGTAAATATCAAGGTTTTGGGTGCATGGGCATATACCCATATTACAGCAAGCTAAAACATGAATCTCAATGTGCATTCAGACCTTATAACTGTCCATATGCTGGTTCTGAATGCGCTGTTGTGGGTGATATACCATACCTGGTGGCCCATCTGAAAGACGATCATAAAGTGGACATGCACAGTGGTTGCGCTTTTAATCATCGCTATGTCAAATCAAATCCACAAGAAGTTGAGAACGCCACATGGATGCTAACGGTCTTTAGTTGCTTCGGCCAGTATTTCTGTCTGCATTTTGAAGCTTTTCAACTAGGAATGGCTCCTGTCTACATCGCGTTTTTGCGGTTCATGGGGGATGATAATGAGGCAAAGAACTACACCTACAGTCTCGAGGTGGGAGGGAATGGTAGGAAGATGATTTGGCAGGGTGTGCCTAGAAGCATTAGGGACAGCCACCGCATGGTTCGTGACAGTTTTGACGGCCTCATCATTCAGAGGAACATGGCACTCTTCTTTTCAGGGGGTGACCGGAAGGAATTGAAACTGCGAGTTACAGGAAGGATTTGGAAGGAACAGTGA 888 0.4516 MASGNPFFDPPQAEEPTEICEIVNDPTPTALKPNGTVSNSVRELLECPVCLNAMYPPIHQCSNGHTLCSDCKPRVHDRCPICMHQLGNIRCLALEKVAASLELPCKYQGFGCMGIYPYYSKLKHESQCAFRPYNCPYAGSECAVVGDIPYLVAHLKDDHKVDMHSGCAFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYTYSLEVGGNGRKMIWQGVPRSIRDSHRMVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4176 295 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 3 295 - -
Lja3g4176 295 SUPERFAMILY RING/U-box 39 86 - -
Lja3g4176 295 CDD Sina 161 289 - -
Lja3g4176 295 ProSiteProfiles Zinc finger RING-type profile. 47 82 IPR001841 -
Lja3g4176 295 CDD RING-HC_SIAHs 45 82 - -
Lja3g4176 295 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 155 288 IPR008974 GO:0005515
Lja3g4176 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 154 IPR013083 -
Lja3g4176 295 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 3 295 - -
Lja3g4176 295 Pfam Seven in absentia protein family 89 288 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lja3g4176 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 99 IPR013083 -
Lja3g4176 295 ProSiteProfiles Zinc finger SIAH-type profile. 100 160 IPR013010 GO:0008270
Lja3g4176 295 SUPERFAMILY TRAF domain-like 100 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4176 Lja-Chr3 81464085 81470164 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4176 3 81464085 81470164 Lja3g2463 3 30831537 30833895 PCT