Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4170 ATGGCCACTCTTGTTGCTCCTAACCAAATTTCTGCTGCTGAAGATGCTCAGGCTCTGAGACAGGCTTTCAAAGGATGGGGAGCTGATGACAAGGCCATAATAGCAATACTGGGTCATAGAAATGTTTATCAGAGGCAGGAAATCAGAAAAGCTTATGAGGAGCTTTTCCAAGAGGATCTCATCAAGCGCCTTGAATCTGAGATCTCTGGTGACTTTGAGAGAGCTATGTTCCGGTGGATGTTGGAACCTGCAGACCGTGATGCTGTTTTGGCCAATGTAGCAATCAGGAATGGCAACAAAGACTACCATGCGGTTGCTGAAATTGCTTGTGTCCTATCAGCTGAGGAACTCTTGGCGGTGAGGCGTGCCTATCACAACCGCTACAAGCGTTCCTTGGAAGAAGATGTGGCTGCTCATACCACTGGCCTTCATCGCCAGCTTTTGGTTGGATTGGTGACCTCATTTAGGTATGAGGGTGATGAGATCAATGCAAAATTGGCACAAACTGAAGCTAACATTCTTCATGAAGCTGTCCAGGAGAAGAAAGGAATCTATGAAGAAGTCATCAGGATCCTTACCACCAGGAGCAAGACACAACTTGTGGCAACTTTCAACCGCTACAAAGATGAGCATGGCATCTCCATCAGTAAGAAATTGTTGGATGAAACATCTGATGACTTCCAGAAGACAATGCACACAGCTATTCGTTGCATCAATGACCATAAGAAATACTACGAGAAGGTTCTGCGCAATGCGATCAAGAAATTTGGAACTGATGAGGATGGACTGAGCCGTGTGATCGTGACAAGGGCTGAGAAGGATCTGAGGGAGATTCAAGAACTCTACTACAAGAGAAACAGTGTTCACCTTGAAGATGCAATCTCCAAGGAAATCTCAGGGGACTACAAGAAGTTCATCCTCACTGTGTTGGGAAAACAAGACTAA 945 0.455 MATLVAPNQISAAEDAQALRQAFKGWGADDKAIIAILGHRNVYQRQEIRKAYEELFQEDLIKRLESEISGDFERAMFRWMLEPADRDAVLANVAIRNGNKDYHAVAEIACVLSAEELLAVRRAYHNRYKRSLEEDVAAHTTGLHRQLLVGLVTSFRYEGDEINAKLAQTEANILHEAVQEKKGIYEEVIRILTTRSKTQLVATFNRYKDEHGISISKKLLDETSDDFQKTMHTAIRCINDHKKYYEKVLRNAIKKFGTDEDGLSRVIVTRAEKDLREIQELYYKRNSVHLEDAISKEISGDYKKFILTVLGKQD* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4170 314 ProSiteProfiles Annexin repeat profile. 10 81 IPR018502 GO:0005509|GO:0005544
Lja3g4170 314 Gene3D Annexin 82 153 IPR037104 GO:0005509|GO:0005544
Lja3g4170 314 Gene3D Annexin 165 239 IPR037104 GO:0005509|GO:0005544
Lja3g4170 314 SUPERFAMILY Annexin 3 312 IPR037104 GO:0005509|GO:0005544
Lja3g4170 314 ProSiteProfiles Annexin repeat profile. 165 236 IPR018502 GO:0005509|GO:0005544
Lja3g4170 314 Gene3D Annexin 242 312 IPR037104 GO:0005509|GO:0005544
Lja3g4170 314 Pfam Annexin 15 76 IPR018502 GO:0005509|GO:0005544
Lja3g4170 314 Pfam Annexin 88 151 IPR018502 GO:0005509|GO:0005544
Lja3g4170 314 Pfam Annexin 247 308 IPR018502 GO:0005509|GO:0005544
Lja3g4170 314 Pfam Annexin 171 232 IPR018502 GO:0005509|GO:0005544
Lja3g4170 314 ProSitePatterns Annexin repeat signature. 257 309 IPR018252 GO:0005509|GO:0005544
Lja3g4170 314 PANTHER ANNEXIN 7 314 - -
Lja3g4170 314 PRINTS Annexin family signature 24 46 IPR001464 GO:0005509|GO:0005544
Lja3g4170 314 PRINTS Annexin family signature 64 80 IPR001464 GO:0005509|GO:0005544
Lja3g4170 314 PRINTS Annexin family signature 297 310 IPR001464 GO:0005509|GO:0005544
Lja3g4170 314 PRINTS Annexin family signature 253 273 IPR001464 GO:0005509|GO:0005544
Lja3g4170 314 Gene3D Annexin 2 81 IPR037104 GO:0005509|GO:0005544
Lja3g4170 314 SMART annex3 99 151 IPR018502 GO:0005509|GO:0005544
Lja3g4170 314 SMART annex3 27 79 IPR018502 GO:0005509|GO:0005544
Lja3g4170 314 SMART annex3 257 309 IPR018502 GO:0005509|GO:0005544
Lja3g4170 314 SMART annex3 185 234 IPR018502 GO:0005509|GO:0005544
Lja3g4170 314 PRINTS Plant annexin signature 118 132 IPR009118 -
Lja3g4170 314 PRINTS Plant annexin signature 160 180 IPR009118 -
Lja3g4170 314 PRINTS Plant annexin signature 225 243 IPR009118 -
Lja3g4170 314 ProSiteProfiles Annexin repeat profile. 82 153 IPR018502 GO:0005509|GO:0005544
Lja3g4170 314 PANTHER ANNEXIN 7 314 - -
Lja3g4170 314 ProSiteProfiles Annexin repeat profile. 240 311 IPR018502 GO:0005509|GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4170 Lja-Chr3 81396339 81400334 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4170 3 81396339 81400334 Lja3g4170 3 81396339 81400334 ECH
Lja3g4170 3 81396339 81400334 Lja3g4659 3 88660442 88662586 PCT