Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4059 ATGCAAAAACTCCAATTCTCCATACTTAAAAACATTGCACCACTGGATCTTTCGATATCAAATGCAGTCATGAGATCTCAAGGATTTTTTCTCCTCTGTATTTTATCTCTGGTTACCCTTGTTGCTGGTGGCACTAAAAGTGTATCTCTAAGTGTCGTGCAACGAGGTGGCAACGCTGCTGCATTTAATAGGAGCCTTTTCCCCTCTGATTTTGTATTTGGAATAGGTTCTTCAGCTTACCAGGCAGAAGGAGCTGCAAGTATAGATGGGAGAGGACCAAGTATATGGGACACTTACACTAAACAGCACCCGGGAAAGATTTGGGATCATAGCAACGGTGATGTAGCAGCTGATTTTTATCATCAATATAAGAGTGACATAAAGCTGGTAAAAGAAATGGGGCTGGATTCATTCAGATTCTCCATCTCATGGTCCAGAATATTCCCAAAGGGCAAGGGGGCAGTCAATAACTTGGGGGTTAAATTCTACAACGATCTCATTAATGAGGTCCTATCAAATGGCTTAATACCTTTTGTGACTATCTTTCATTGGGATCTCCCACAAGCTCTTGAAGATGAATATGGGGGATTTCTCAGTCCTAAAGTAGTGGCAGATTTTCATGGCTATGCTGACTTTTGCTTCAAGACTTTTGGCGACCGGGTGAAGCATTGGGTCACACTGAATGAACCATTTTCGTACGCTATCAATGGTTACCATGGTGGCACCTTTGCACCTGGTAGATGTTCTATGTATGTTGGAAATTGCACCACCGGTGACTCCGCCACCGAGCCTGCATTGTTGGGTCGTCAAAAAGGAAAAATTGGAATCACCTTAGTGACTCAATACTTGGAACCAAAATCAAACAATGTTCACGATCGGGAGGCTGCAAGTCGAGGTCTAGATTTTTTCTTTGGATGGTTTGCTCATCCCATCACTTATGGTGACTATCCCCAGAGTATGAGATCTTCCGTGCGTGACAGACTCCCCAAATTCACAAAAGAGCAGTCTCAAAATCTCAAAGGTTCTTATGATTTTATTGGTGTGAATTATTACACCTCATATTATGCTGAAAGTGCTGCACCTACCAGCATCAACAAGACATATTACACAGATATGCAAGCCCATCTCAGTCCGTTCAGGAATTTTAAACCTATTGGCCCACCGACTTCTTTGAACTGGCTCTACATATATCCGGAGGGAATTCATCGACTCCTGAAACACATAAAGGATGGATACATGAATCCACAAATATATATTACAGAAAATGGCATGGCTAGTAAAAGGAAGGACTTGATACCAGTCAATGTAGCCTGCAATGATAAAATCAGGATTTCGTACCATGAGAAACATCTCAAATTCCTTCTTGAAGCAATCAAAGATGGTGTTAACCTGAAGGGCTACTATGCATGGTCATTTTCTGACAGCTATGAATGGGATGCTGGCTACACAGTTCGATTCGGCTTCGTTTACATAGATTACAAGAACAATTTGACAAGATATCCCAAGTATTCTTATTCTTGGCTGAAAAAATTCCTTCTCAAGTGA 1545 0.4155 MQKLQFSILKNIAPLDLSISNAVMRSQGFFLLCILSLVTLVAGGTKSVSLSVVQRGGNAAAFNRSLFPSDFVFGIGSSAYQAEGAASIDGRGPSIWDTYTKQHPGKIWDHSNGDVAADFYHQYKSDIKLVKEMGLDSFRFSISWSRIFPKGKGAVNNLGVKFYNDLINEVLSNGLIPFVTIFHWDLPQALEDEYGGFLSPKVVADFHGYADFCFKTFGDRVKHWVTLNEPFSYAINGYHGGTFAPGRCSMYVGNCTTGDSATEPALLGRQKGKIGITLVTQYLEPKSNNVHDREAASRGLDFFFGWFAHPITYGDYPQSMRSSVRDRLPKFTKEQSQNLKGSYDFIGVNYYTSYYAESAAPTSINKTYYTDMQAHLSPFRNFKPIGPPTSLNWLYIYPEGIHRLLKHIKDGYMNPQIYITENGMASKRKDLIPVNVACNDKIRISYHEKHLKFLLEAIKDGVNLKGYYAWSFSDSYEWDAGYTVRFGFVYIDYKNNLTRYPKYSYSWLKKFLLK* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4059 514 ProSitePatterns Glycosyl hydrolases family 1 active site. 417 425 IPR018120 -
Lja3g4059 514 Pfam Glycosyl hydrolase family 1 65 511 IPR001360 GO:0004553|GO:0005975
Lja3g4059 514 Gene3D Glycosidases 47 268 - -
Lja3g4059 514 Gene3D Glycosidases 269 513 - -
Lja3g4059 514 PRINTS Glycosyl hydrolase family 1 signature 440 451 IPR001360 GO:0004553|GO:0005975
Lja3g4059 514 PRINTS Glycosyl hydrolase family 1 signature 461 478 IPR001360 GO:0004553|GO:0005975
Lja3g4059 514 PRINTS Glycosyl hydrolase family 1 signature 342 356 IPR001360 GO:0004553|GO:0005975
Lja3g4059 514 PRINTS Glycosyl hydrolase family 1 signature 485 497 IPR001360 GO:0004553|GO:0005975
Lja3g4059 514 PRINTS Glycosyl hydrolase family 1 signature 417 425 IPR001360 GO:0004553|GO:0005975
Lja3g4059 514 PANTHER GLYCOSYL HYDROLASE 32 267 IPR001360 GO:0004553|GO:0005975
Lja3g4059 514 SUPERFAMILY (Trans)glycosidases 59 512 IPR017853 -
Lja3g4059 514 PANTHER GLYCOSYL HYDROLASE 269 513 IPR001360 GO:0004553|GO:0005975
Lja3g4059 514 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 71 85 IPR033132 -
Lja3g4059 514 PANTHER BETA-GLUCOSIDASE 17 32 267 - -
Lja3g4059 514 PANTHER BETA-GLUCOSIDASE 17 269 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4059 Lja-Chr3 79921027 79934038 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4059 24 512 Glycoside Hydrolase AT5G44640 45.809 2.34e-163 471
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4059 3 79921027 79934038 Lja3g2624 3 36005298 36012341 PCT