Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4014 ATGATGCAGGGCAGTGGACAACTAGCAGTTCCTCCAGGGTTCAGGTTCCACCCTACAGATGAGGAGCTTCTGTACTATTACCTGAGGAAGAAGGTTTCTTATGAAGCTATTGATCTTGATGTCATAAGAGAAGTAGATCTCAACAAACTTGAGCCTTGGGACCTCAAAGATAAGTGTAGGATTGGGTCAGGGCCTCAGAATGAGTGGTATTTCTTTAGCCACAAGGACAAGAAATACCCAACAGGAACAAGAACAAATCGAGCAACCACAGCTGGTTTTTGGAAAGCAACTGGAAGGGACAAAGCCATATACCACAGCAATTCCAAGAGGATTGGCATGAGGAAAACCCTTGTCTTCTACACCGGCCGCGCACCTCATGGCCAGAAGACTGACTGGATCATGCATGAGTACCGCCTTGATGACGATGATGCTGAGGTTCAGGAAGATGGGTGGGTGGTTTGCAGGGTGTTCAAAAAGAAAAACACAACTAGAGGTTTCCAGCAGCAAGAAATTGAAGAAGAAGAGCACTTTAGCCACATGATGAGACCAACAAATAATGGTCCTTGCCACCAGATTCTAGAGTCAAAACACCATCATCACAATATGCAAGGACTATATGATAGCAGCAGCTTTGATGGGACAATTCACTTACCACAGCTATTCAGTCCAGAATCAGCAGCTGTAGCACCCACTAATTGCATGAACACCATGGACATCCTTGAGTGCTCCCAAAACTTGTTGAGGCTCACAACAACAACAACTGGCTGTGGACTCAATCTCATGCAGCAACAGCAAGGAGATCAGAGGTTCACTGGTGATTGGTCTTTCTTGGACAAGCTACTAGCATCACACCATCCTACTCAGCCTCACCATGCTGTGGGAAGTACTTCAGCTCAGAAATTTCCATTCCATTATCTTGGCAATGAGGCCCATGATATTATGAAATTTTCCAAGTGA 957 0.4535 MMQGSGQLAVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHSNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDDDDAEVQEDGWVVCRVFKKKNTTRGFQQQEIEEEEHFSHMMRPTNNGPCHQILESKHHHHNMQGLYDSSSFDGTIHLPQLFSPESAAVAPTNCMNTMDILECSQNLLRLTTTTTGCGLNLMQQQQGDQRFTGDWSFLDKLLASHHPTQPHHAVGSTSAQKFPFHYLGNEAHDIMKFSK* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4014 318 Gene3D NAC domain 19 164 IPR036093 GO:0003677|GO:0006355
Lja3g4014 318 ProSiteProfiles NAC domain profile. 10 159 IPR003441 GO:0003677|GO:0006355
Lja3g4014 318 SUPERFAMILY NAC domain 5 159 IPR036093 GO:0003677|GO:0006355
Lja3g4014 318 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
Lja3g4014 318 PANTHER PROTEIN SOMBRERO 6 291 - -
Lja3g4014 318 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4014 Lja-Chr3 79180312 79183288 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4014 2 318 NAC Transcription Factor Family AT1G79580 52.742 6.58e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja3g4014 NAM 2.5e-38 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4014 3 79180312 79183288 Lja3g4014 3 79180312 79183288 ECH