Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3972 ATGGCCGCTTCATCTCTCCTCAGATCTGCACTTGTCTCCTCCTCACGACACGACCTCTCACCTTCCTCCTCCGACCGCTTCAAGGTGTTTAACCATGCCTCAAGCTGTAATATAACACCCAAGAGTTTGCAGAACAACGTATTTGGAACATCGATTCCGTGTGAATCAATAGGCTTACAAAACTGCCGTTCCCGGAGCATACAGCCTATCAAAGCCACTGCAACGGAAATCCCTCTCCCTGTACAGAGGTCAAGCAGTGCTGGGAAGACAAGAATTGGAATAAATGGTTTTGGTAGAATTGGAAGGCTGGTGTTTCGCATAGCTACTTCCCGGGATGATATTGATGTTGTTGCAATTAATGATCCTTTTATTGATGCTAAATATATGGCTTACATGTTTAAGTATGATTCTACTCATGGACCGTTTAAAGGAAGCATTAAGGTTTTGGATGACAATACTTTGGAGATTAATGGGAAGCAGGTTAAAGTTGTGAGTAAAAGAGATCCTGCAGAGATCCCGTGGAGTGATTTTGGGGCTGATTATGTTATCGAGTCTTCAGGAGTTTTTACAACATTAGAGAAAGCTTCATCACATTTGAAGGCTGGTGCCAAGAAAGTCATAATATCAGCTCCATCTGCTGATGCACCTATGTTTGTGGTTGGAGTCAATGAGAAAACATACAATCCTAGCATGGACATTGTATCTAATGCAAGCTGTACAACGAATTGTCTTGCTCCTCTTGCCAAGGTGGTTCACGAGGAGTTTGGTATACTTGAAGGTTTGATGACAACAGTCCATGCAACTACAGCAACACAAAAGACTGTAGATGGTCCTTCAATGAAGGATTGGCGAGGGGGAAGAGGGGCAGCTCAAAATATAATCCCAAGTTCTACTGGTGCTGCAAAGGCTGTTGGAAAAGTTCTTCCTGAGCTAAATGGAAAACTCACTGGAATGGCATTCCGGGTGCCTACCCCTAATGTTTCTGTAGTGGACTTAACTTGTCGACTTCAAAAGAATGCTTCCTATGAAGATGTTAAAGCAGCAATAAAGCGTGCTTCAGAGGGACCACTAAAAGGAATTCTTGGATACACAGATGAGGATGTTGTCTCTAATGACTTCGTTGGTGATTCAAGGTCAAGTATCTTTGACGCTAAGGCTGGGATTGCGCTTAGTGCTTCCTTTGTGAAGATGGTTTCGTGGTATGACAACGAGTGGGGTTACAGCAACCGAGTGTTGGACCTTGTAGGGCACATGGCGCTGGTGGGATCTTGCAATTGA 1278 0.4397 MAASSLLRSALVSSSRHDLSPSSSDRFKVFNHASSCNITPKSLQNNVFGTSIPCESIGLQNCRSRSIQPIKATATEIPLPVQRSSSAGKTRIGINGFGRIGRLVFRIATSRDDIDVVAINDPFIDAKYMAYMFKYDSTHGPFKGSIKVLDDNTLEINGKQVKVVSKRDPAEIPWSDFGADYVIESSGVFTTLEKASSHLKAGAKKVIISAPSADAPMFVVGVNEKTYNPSMDIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLQKNASYEDVKAAIKRASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIALSASFVKMVSWYDNEWGYSNRVLDLVGHMALVGSCN* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3972 425 SMART gp_dh_n_7 90 239 IPR020828 GO:0051287
Lja3g3972 425 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 91 255 IPR036291 -
Lja3g3972 425 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 244 401 IPR020829 GO:0016620
Lja3g3972 425 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 91 191 IPR020828 GO:0051287
Lja3g3972 425 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 237 244 IPR020830 GO:0016620
Lja3g3972 425 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 91 413 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Lja3g3972 425 Gene3D - 91 415 - -
Lja3g3972 425 Gene3D Dihydrodipicolinate Reductase; domain 2 238 403 - -
Lja3g3972 425 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 1 423 IPR020831 GO:0016620
Lja3g3972 425 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 238 401 - -
Lja3g3972 425 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 233 251 IPR020831 GO:0016620
Lja3g3972 425 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 357 372 IPR020831 GO:0016620
Lja3g3972 425 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 198 211 IPR020831 GO:0016620
Lja3g3972 425 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 317 334 IPR020831 GO:0016620
Lja3g3972 425 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 260 276 IPR020831 GO:0016620
Lja3g3972 425 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 1 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3972 Lja-Chr3 78322220 78327806 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3972 3 78322220 78327806 Lja3g3972 3 78322220 78327806 ECH