Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3919 ATGGCGAAACCTGGCCGAGGCCGTCGTTCGCCGCCGTCGGGTTCCGTTTCCGGCTCCTCCTCTCGCTCCTCCTCCCCGTCCTCTTCTCGCTCATCATCTCGCTCCCGCTCGCTCTCGCGCTCCAGATCTTTCTCTTCCTCCTCCTCTTCTCCTTCCCGCGGCGGTTCCCGCAGCCGCAGCCCTCCTCCTCAGCGGCGGAAAAGTCCTGTTGAAGCAGCTAGGCGAGGTCGATCTCCTCCTCCTTCTAAGAGAGCTTCCCCTCCTTCTAAGAGAGCTTCTCCTCCCCCAAGGAAACCTTCTCCTACACGTGAATCACTTGTTCTGCACGTAGAAAAACTCAGCAGGAATGTCAATGAAGGCCATTTGAAAGAAATTTTCAGTAACTATGGTGAGGTTGTAAGTGTGGAGTTGGCGATGGATCGAATTGTGAATCTTCCAAAAGGATATGCATATGTGCAATTCAAGGCAAGAGGGGATGCAGAAAAAGCATTGTTGTACATGGATGGTGCCCAAATAGATGGCAACGTCATTAAGGCAAGATTTACTCTACCTCCAAGACAGAAAGTTTCACCACCCCCTAAGCCTTCTGCTCTTGCTCCGAAGAGAGAGGCCCCTAGGACTGACAATGCTGGTGCTGATATTGAAAAGGATGGGCCGAAGCGTCAAAGAGAATCTTCTCCTCGGAGAAAACCCCCTCCCTCACCACGGAGGAGGTCTCCCGTGCCTCGAAGAGTTGGATCTCCAAGACGACCAGATTCTCCTCGCCGTCGTGTGGATTCTCCTGTCCGTCGTCGACTAGACTCTCCTTATCGTCGTGGAGGTGACACACCTCCTAGGAGGAGGCCTGTGTCTCCTGGAAGAGGTCGCTCTCCATCTCCACCAAGGCGCCTAAGATCACCTGCAAGGGTTTCACCTAGAAGGTTGCGTGGAAGCCCTGGTCGGAGACGTTCTCCTCCTCCTCCTCCAAGGCGCCGTTCACCACCTCCTAGACGAGCTCGTAGTCCTCCTAGAAGGTCTCCCATCGGTCGTAGGCGCAGTCGCTCTCCAATACGTAGGCCTGCACGCTCAAACTCAAGATCATTCTCACCTCGCAGAGGTCGACCACCTGTTAGACGGGGGAGATCATCATCCTTCTCTGACTCACCAAGTCCACGGAAGGTATCTCGGAGATCAAGGAGTCGCAGTCCTAGAAGGCCTTTGAGAGGAGGAAGAGCCAGTAGCAACAGTAGCAGTAGCAGTTCACCACCACCACCACCACCTCCTGCTCGCAAACCTTAG 1278 0.5469 MAKPGRGRRSPPSGSVSGSSSRSSSPSSSRSSSRSRSLSRSRSFSSSSSSPSRGGSRSRSPPPQRRKSPVEAARRGRSPPPSKRASPPSKRASPPPRKPSPTRESLVLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKALLYMDGAQIDGNVIKARFTLPPRQKVSPPPKPSALAPKREAPRTDNAGADIEKDGPKRQRESSPRRKPPPSPRRRSPVPRRVGSPRRPDSPRRRVDSPVRRRLDSPYRRGGDTPPRRRPVSPGRGRSPSPPRRLRSPARVSPRRLRGSPGRRRSPPPPPRRRSPPPRRARSPPRRSPIGRRRSRSPIRRPARSNSRSFSPRRGRPPVRRGRSSSFSDSPSPRKVSRRSRSRSPRRPLRGGRASSNSSSSSSPPPPPPPARKP* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3919 425 MobiDBLite consensus disorder prediction 300 352 - -
Lja3g3919 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 178 IPR000504 GO:0003723
Lja3g3919 425 PANTHER BNAA09G56240D PROTEIN 1 406 - -
Lja3g3919 425 MobiDBLite consensus disorder prediction 248 278 - -
Lja3g3919 425 Gene3D - 12 190 IPR012677 -
Lja3g3919 425 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 1 406 - -
Lja3g3919 425 MobiDBLite consensus disorder prediction 12 63 - -
Lja3g3919 425 SMART rrm1_1 107 180 IPR000504 GO:0003723
Lja3g3919 425 CDD RRM_RNPS1 108 180 IPR034201 -
Lja3g3919 425 MobiDBLite consensus disorder prediction 1 105 - -
Lja3g3919 425 MobiDBLite consensus disorder prediction 81 101 - -
Lja3g3919 425 MobiDBLite consensus disorder prediction 206 231 - -
Lja3g3919 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Lja3g3919 425 MobiDBLite consensus disorder prediction 183 425 - -
Lja3g3919 425 SUPERFAMILY RNA-binding domain, RBD 93 191 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3919 Lja-Chr3 77108674 77114087 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3919 108 181 Eukaryotic Initiation Factors Gene Family AT2G23350 32.432 3.49e-07 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3919 3 77108674 77114087 Lja3g3919 3 77108674 77114087 ECH