Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3912 ATGGCTACACTGCTGAATACAGTGTCACCAGCAGCAAATTTATCAGCAAAGACAAGAAGAACAAACAGTTCTTGTTTCCTGTATTCCCAGGTTCTAAATCTTCGCACTTTTTCACTTAACAAGGGTTTTTCTAGGGTTTTAGCTTCAGCCCAGATTTCTATTTCCCCAAAAGATTCAATTTTTACTCTGCCCAATTGGAGGGTAGGGAAGAATGACCAAAAGAGTAAAGAAGTGAGGCTCAATGATGCATTTCTTCATTTAGAGTATATGGTGGGTAAGGGCCAAAAGCCTGATGTAGCTCAAGCAACTCAGCTCTTGTATGATCTTTGCAAGTCTAATAAAGCTAGGAAAGCTGTTAGAGTTATGGAGATGATTGTAGGTTCTGGTATTATACCAGATGCTGCTTGTTACACACACTTGGTTAATTTTTTGTGTAGGAGGGGGAATATTGGTTATGCAATGCAGTTGGTTGAGAAGGTGGAGGAGCATGGCTTTCAAACTGGTACTGTTACTTATAACACTCTAGTTAAAGGGCTTTGCTCTCATGGGAAATTAAATCAGAGTTTGCAGCTTTTAGACCGGTTGACGAAGAAGGGTCTGAAACCAAATGTATTTACATATTCTTTCCTGCTTGAAGGTGCTTACAAAGAAAGGGGTGTAGATGAAGCCATGAAGCTTCTAGATGATATTATTGCCAGGGGTGGGGAGCCTAATTTAGTTAGTTACAATGTATTGTTGACCGGGTTGTGCAAGGAAGGTAGAACGGAAGATGCTATTGAGCTTTTCAGGGATTTGCCTGCTAAAGGGTTCAGTCCTAGTGTTGTGAGTTATAACATTTTACTGAGGAGTTTGTGCTATGAAGGGCGGTGGGAGGAAGCGAATGGACTTTTAGCAGAGATGGATGAAGAGGACCTGTCTCCCTCTGTTGTTACTTACAACATATTGATTACTTCCCTTTCTCTTCACGGAAGAACAGAACAGGCTTTCGAAGTTTTAGATGAAATGACAAGGAGTGGGTTCAATGTGACTGCTACTAGCTATAATCCAATAATTGCTCGCCTCTGCAAGGAAGGGAAGGTTGATCTTGTGGTTCAGTGTCTAGACCAAATGATTTGTCGGCGTTATAGTCCTAATGAAGGAACATACAATGCTATTGCAATGCTTTGTGAGCAAGGGAAGGTGCAGGAGGCTTTCTTTATATTCCAAAGCTTGGGTAATAAACAAAACTGCCCTATGCATGATTATTGCAAAAATGTGATTTCAATGCTGTGTAGGAAAGGAAACACATATCCAGCCTTTCAGATGTTATATGAAATGACCAAGTGTGGATTTACTCCAGATTCCTACACTTATTCATCATTGGTTAGAGGAATGTGTAGGGAGGGAATGCTAGATGAGGCTCTTGAGATATTCAGGATTTTGGAAGAAAATGACTACATGCCTGATATTGATAATTACAATGCACTCATACTTGGATTTTGCAAATATCAAAGAACAGACTTGTCAATAGAGATATTTCAGAGGATGGTTAACAAAGGATGTGTGCCTAATGAGATAACCTATACCATTCTTGTTGAAGGCCTCGCTTTCGAAAACGAATTGGATATAGCAGCCGGCCTGATGAAAGAGTTATACATGAGAGAGGTTTTGAGTCGAAGTACGGTTGATAGACTTTCTATGCAATATGACCTCAAGGAATTTACAGCATAG 1710 0.4018 MATLLNTVSPAANLSAKTRRTNSSCFLYSQVLNLRTFSLNKGFSRVLASAQISISPKDSIFTLPNWRVGKNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTVDRLSMQYDLKEFTA* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3912 569 Pfam PPR repeat family 481 529 IPR002885 -
Lja3g3912 569 Pfam PPR repeat family 345 384 IPR002885 -
Lja3g3912 569 Pfam PPR repeat family 237 285 IPR002885 -
Lja3g3912 569 Pfam PPR repeat family 169 213 IPR002885 -
Lja3g3912 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Lja3g3912 569 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 567 - -
Lja3g3912 569 Gene3D Tetratricopeptide repeat domain 185 302 IPR011990 GO:0005515
Lja3g3912 569 Gene3D Tetratricopeptide repeat domain 384 566 IPR011990 GO:0005515
Lja3g3912 569 Pfam PPR repeat 129 159 IPR002885 -
Lja3g3912 569 Pfam PPR repeat 443 472 IPR002885 -
Lja3g3912 569 Pfam PPR repeat 304 336 IPR002885 -
Lja3g3912 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Lja3g3912 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Lja3g3912 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Lja3g3912 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Lja3g3912 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Lja3g3912 569 SUPERFAMILY HCP-like 84 274 - -
Lja3g3912 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Lja3g3912 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Lja3g3912 569 TIGRFAM PPR: pentatricopeptide repeat domain 275 308 IPR002885 -
Lja3g3912 569 TIGRFAM PPR: pentatricopeptide repeat domain 486 518 IPR002885 -
Lja3g3912 569 TIGRFAM PPR: pentatricopeptide repeat domain 310 343 IPR002885 -
Lja3g3912 569 TIGRFAM PPR: pentatricopeptide repeat domain 449 482 IPR002885 -
Lja3g3912 569 TIGRFAM PPR: pentatricopeptide repeat domain 240 274 IPR002885 -
Lja3g3912 569 TIGRFAM PPR: pentatricopeptide repeat domain 170 204 IPR002885 -
Lja3g3912 569 TIGRFAM PPR: pentatricopeptide repeat domain 346 379 IPR002885 -
Lja3g3912 569 Gene3D Tetratricopeptide repeat domain 72 184 IPR011990 GO:0005515
Lja3g3912 569 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 567 - -
Lja3g3912 569 Gene3D Tetratricopeptide repeat domain 303 372 IPR011990 GO:0005515
Lja3g3912 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3912 116 569 Glycosyltransferase AT1G05670 24.783 2.24e-43 163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3912 3 77056791 77058808 Lja3g3912 3 77056791 77058808 ECH